SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1805

Length: 1165 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1805 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13210	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Cryptochrome 1a n=3 Tax=Physcomitrella patens RepID=E1C9X9_PHYPA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	blue-light photoreceptor	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	77%
Blast2go	receptor activity	GO:0004872	Molecular Function	77%
Blast2go	DNA photolyase activity	GO:0003913	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Cryptochrome/DNA photolyase, class 1	IPR002081	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Cryptochrome, plant	IPR014134	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal	IPR018394	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX1

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 296 - 655

Fln protein: MAHLVNTNNNKNNDFGDSDSQVEMAKEESQPQPCTIVWFRRDLRVEDNPALANAARRGGTVIPVYIWCPKEEGEFYPGRVSRWWLKQSLIHLHHSLQALGSPLVMIKAQESTLSALLGCCRSTGATRIFYNHLYDPVSLVRDHNLKQQLLELGLCVQSFNGDLLYEPWEIYDDKGQAFTTFDPYWRRCLKMPFEPEAPLLPPRRLMPPAGVVLGCTAEELSLEHETEKSSNALLSRGWSPGWSNADKALDEFLAGPLLDYAKNRQKADGSTTSLLSPHLHFGELSVRKVFHCVRRK

Protein Length: 297

Fln nts: ATGGGGACCGAAAGGACGGACCGAATCCCGATGGATTTATGTATGTCAGTCGCATCTCCCGGTCAGAGAGAGGCACCTTGGAAGCCCCAATCAACCATACGATGAAACACGATTTCATACGAAATCGATCAGAAGAAACTGACTGCACAGGACACTGAGGTGTATGTGCGCATAATATGGCAACCACATTCATTTCCCCAGCTGCGGTAACTCTCCATGGTGAGATGAGATGAAAAGAGGGATAATCAGTGGAACTCTCCACAGTCTCCGCCCAGA_-_ATGGCACACCTCGTTAATACTAATAATAATAAGAATAATGATTTTGGGGATTCAGATTCACAGGTGGAGATGGCGAAGGAGGAGTCTCAGCCTCAGCCTTGCACAATTGTATGGTTCAGAAGGGATCTTCGAGTGGAAGATAACCCTGCCCTGGCAAACGCAGCAAGGCGGGGTGGCACTGTAATCCCTGTTTACATTTGGTGTCCCAAAGAAGAAGGCGAGTTCTACCCTGGTCGAGTTTCTAGGTGGTGGCTAAAGCAATCTCTCATTCATCTCCATCACTCTCTTCAGGCACTTGGTTCCCCTCTAGTAATGATTAAAGCGCAAGAAAGCACTCTTTCTGCTCTTTTGGGCTGCTGCAGATCCACTGGCGCTACTCGGATCTTTTACAATCACCTCTACGATCCTGTATCACTTGTTCGAGATCATAACCTCAAGCAGCAGCTTCTGGAACTAGGATTATGTGTGCAGAGCTTCAATGGAGATTTACTATATGAACCTTGGGAAATATATGATGACAAAGGACAGGCTTTTACCACCTTTGATCCATACTGGAGAAGGTGCCTAAAAATGCCTTTTGAGCCTGAGGCACCACTTCTTCCTCCCCGGCGATTGATGCCACCAGCAGGTGTGGTTTTGGGTTGTACGGCAGAAGAATTATCCCTTGAACATGAAACTGAAAAATCAAGCAATGCCTTGCTAAGCAGAGGATGGTCTCCTGGTTGGAGCAATGCAGATAAAGCATTGGATGAATTTTTGGCAGGACCTCTACTGGATTATGCAAAGAATAGGCAGAAGGCTGATGGTTCCACCACTTCCCTTCTGTCACCTCACTTGCACTTTGGAGAATTGAGTGTAAGAAAAGTGTTCCATTGTGTGCGAAGGAAAC

Fln Alignment:

Contig1805___CTIVWFRRDLRVEDNPALANAARRGGTVIPVYIWCPKEEGEFYPGRVSRWWLKQSLIHLHHSLQALGSPLVMIKAQESTLSALLGCCRSTGATRIFYNHLYDPVSLVRDHNLKQQLLELGLCVQSFNGDLLYEPWEIYDDKGQAFTTFDPYWRRCLKXXXXXXXXXXXXXXXXXXAGVVLGCTAEELSLEHETEKSSNALLSRGWSPGWSNADKALDEFLAGPLLDYAKNRQKADGSTTSLLSPHLHFGELSVRKVFHCVR
B8LPX1_________________CSIVWFRRDLRVEDNPALA-AGVRAGAVIVLYIWSPEEEGQYYPGRVSRWWLKQSLAHLDSSLRNLGARLIT-KRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIVA--GEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKADSATTSLLSPHLHFGELSVKKVFHLLR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
845	80	20			0.995493
847	80			20	0.995493
929		40		60	1.0
958	66	33			0.997452
964			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
858	869	TTA TTA TTA TTA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain