SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1796

Length: 532 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1796
ACAAATCAGGCAGGCTTGTGCCTGAATACAGGCCTGCTGCAAGTCCAACATTTGTGGTCTCGAAACACTCTAATTCTCACAGAAAGGTCATTGAGATGAGAAGGCAGAAGGAAATGCAGGACGCCCTACAGCAGGCCTCCAAACTGTACCCAAATGACAAGGAAGGGAATGAAGATGGGGATGAATATGAGGAGGATGAGGATGGATCAGATGGTCAATACCCTCATTTTGGCTCGGATGATGATACTTACTTAGTCCATACAAATCAGGATTACAGGCATTTCATATGATGCAACAATTCAACAGCAAATTCCCTACCATCTGTACAATTTTTAATACTAACAAAGCAGCAGGGAGGGAGGCAAGCACTCAAGGGGGTCTTATTCACCCATCACAGCAGTACATTCCAGTGTGTTCACTGGGGTAATTGGTAGCACAAATTTCTGTCTTTCAAGTATACAGGATGATGATCAACAAGCGAGGGAAATGATGACTGGCTTGTTGCTGGAAGGAAGGAAGAGGGGATTTCAGA

Ace file of the UniGene biog2_v2.0_unigene1796 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8848	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RQG2_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	56%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Transcription factor, GATA, plant	IPR016679	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1P7

Fln msg: your sequence is shorter than subject: 96 - 131

Fln protein: KSGRLVPEYRPAASPTFVVSKHSNSHRKVIEMRRQKEMQDALQQASKLYPNDKEGNEDGDEYEEDEDGSDGQYPHFGSDDDTYLVHTNQDYRHFI*

Protein Length: 97

Fln nts: ACAAATCAGGCAGGCTTGTGCCTGAATACAGGCCTGCTGCAAGTCCAACATTTGTGGTCTCGAAACACTCTAATTCTCACAGAAAGGTCATTGAGATGAGAAGGCAGAAGGAAATGCAGGACGCCCTACAGCAGGCCTCCAAACTGTACCCAAATGACAAGGAAGGGAATGAAGATGGGGATGAATATGAGGAGGATGAGGATGGATCAGATGGTCAATACCCTCATTTTGGCTCGGATGATGATACTTACTTAGTCCATACAAATCAGGATTACAGGCATTTCATATGA___TGCAACAATTCAACAGCAAATTCCCTACCATCTGTACAATTTTTAATACTAACAAAGCAGCAGGGAGGGAGGCAAGCACTCAAGGGGGTCTTATTCACCCATCACAGCAGTACATTCCAGTGTGTTCACTGGGGTAATTGGTAGCACAAATTTCTGTCTTTCAAGTATACAGGATGATGATCAACAAGCGAGGGAAATGATGACTGGCTTGTTGCTGGAAGGAAGGAAGAGGGGATTTCAGA

Fln Alignment:

Contig1796___KSGRLVPEYRPAASPTFVVSKHSNSHRKVIEMRRQK
A9P1P7_________________KSGRLFPEYRPAKSPTFIRYIHSNSHKKVLEMRNQE

SSRs (tot: 1)

Start position	End position	Sequence	Length
14	26	CTTC CTTC CTTC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain