SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1795

Length: 615 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1795 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9212	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Ceramidase, putative n=1 Tax=Ricinus communis RepID=B9S377_RICCO	-	-	65%
FL-Next	sp=Neutral ceramidase; Oryza sativa subsp. japonica (Rice).	-	-	74%
Blast2go	neutral ceramidase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ceramidase.	EC:3.5.1.23	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	ceramidase activity	GO:0017040	Molecular Function	0.0	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-
Sma3	Neutral/alkaline nonlysosomal ceramidase	IPR006823	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	T %	Probability
348		85	14	0.993533
354	71	14		0.984337
355	85	14		0.993533
356		14	85	0.993533
358	83		16	0.994512
421	80	20		0.995493
422		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain