SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1785

Length: 286 nt

UniGene Fasta

>biog2_v2.0_unigene1785
TAACAACAACAACGGTGCATTTGACAAGCGATTAGGACTCTGCCCTCGACAGAAATGCTGCCTAGAAATGAGATACTTGGGGGTTACATCTTGTATGCAATAACGATACCATGCAGGAGGATCTAAAGCGTCAGCTTTTGGTTTGCCTCAGAGATACCGGGATTCAGTTCGGGCAATAACTCCAGGGTTACCCCTGTTTTTGTACAATTATACAACTCATCAATTGCATGGCGTTTTTGAGGCCGCCAGTTTTGGAGGGTCTAATATTGACCCAACAGCATGGGAA

Ace file of the UniGene biog2_v2.0_unigene1785

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7476	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] dbj\|BAB01090.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24231.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AAM65351.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AEE7	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	gda2 protein	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSD7

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 95 - 282

Fln protein: NNNNGAFDKRLGLCPRQKCCLEMRYLGVTSCMQ*RYHAGGSKASAFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGGSNIDPTAWE

Protein Length: 96

Fln nts: TAACAACAACAACGGTGCATTTGACAAGCGATTAGGACTCTGCCCTCGACAGAAATGCTGCCTAGAAATGAGATACTTGGGGGTTACATCTTGTATGCAATAACGATACCATGCAGGAGGATCTAAAGCGTCAGCTTTTGGTTTGCCTCAGAGATACCGGGATTCAGTTCGGGCAATAACTCCAGGGTTACCCCTGTTTTTGTACAATTATACAACTCATCAATTGCATGGCGTTTTTGAGGCCGCCAGTTTTGGAGGGTCTAATATTGACCCAACAGCATGGGAA

Fln Alignment:

Contig1785___NNNNGAFDKRLGLCPRQKCCLEMRYLG--VTSCMQ*RYHAGGSKASAFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGGSNIDPTAWE
C0PSD7_________________SNNNNAYDKRFKTLPSTEMLPRNEILGGYIFVCNNDTMQED-LKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWE

SSRs (tot: 1)

Start position	End position	Sequence	Length
2	13	AAC AAC AAC AAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain