SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1758

Length: 1030 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1758

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4876	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding protein1 [Zea mays] gb\|AAA33486.1\| nucleic acid-binding protein [Zea mays] gb\|ACG38158.1\| ribonucleoprotein [Zea mays] gb\|ACL52389.1\| unknown [Zea mays]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	31 kda chloroplastic-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVB2

Fln msg: your sequence is shorter than subject: 234 - 290

Fln protein: AASIRKRGGVKRAPVMANASEWEQDVGVKTQEGEEGETVAGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMATVEEAEKGVELFNRYSLEGRLLTVNKAAPRGTKFERPAQPASGSKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVTDAIAALDGTELDGRPLRVNIAEDRSRRGF*

Protein Length: 235

Fln nts: CCGCAGCGTCAATCAGAAAGCGGGGTGGCGTCAAGAGGGCGCCCGTCATGGCAAACGCCTCGGAGTGGGAGCAAGATGTAGGGGTCAAGACACAAGAAGGAGAAGAAGGGGAAACTGTGGCAGGTGAAATCGATTTTGAGAATGAATTTGTGGAGCTTCCAGAGGGGACGAAGCTGTTTGTGGGGAATTTGCCCTTCAACTTAGACAACCAGCAACTTGGCGAGCTCTTTGAAGGCGCTGGAGAAGTCTTGGATGTCAATATCATTACGGACAGAGAAACTGGAAACTCTCGTGGCTTTGGTTTTGTGACCATGGCCACTGTTGAAGAGGCAGAGAAAGGGGTTGAGCTTTTCAATAGATATAGCTTAGAGGGCAGACTCTTGACAGTCAATAAGGCTGCTCCTCGAGGAACCAAATTTGAAAGGCCAGCTCAACCTGCCTCTGGCAGCAAAATTTATGTTGGGAATTTGCCATGGCAGGCTGATGATAATAGCTTGTTGCAATTATTCAGCGAACATGGAAAGGTTTTGGAAGCAAGAGTTGTATATGATAGAGAAACTGGGCGGTCACGAGGCTTTGGATTTGTTACATACTCATCAGAAAGTGAAGTTACTGATGCCATTGCTGCCCTCGATGGAACTGAACTGGATGGGAGGCCCTTGAGAGTGAACATTGCTGAGGACAGATCTAGACGAGGATTTTGA___GGTAGAATAGTGGGCTTTCAGTTGTTTCTCGTGCTTCTGCAGTGCCTTCCACCTTTGTACAGTGGACTGCTAGCTGCTTTTTTTCCTATTTTTAAAACCTCCATATGTCTTGCAGATCTTGTACTCTTATTGTGCAGAGGTGTTGCTTTTTGGTTTTTCCGCACGGTTCTATTTATTACACAATATATTCAGATTTGTTAATGATAATATGAGCCATGATAATATGAGCCAAGGCAATTCTTAGTTTTTGTAGCTGTATTAAAGTGTTGTAATGACACGTGCATGCAAGGAAAATGGAGAAAGCTTGTTCTTTCTTGGAAATACTT

Fln Alignment:

Contig1758___AASIRKRGGVKRAPVMANASEWEQDVGVKTQ-EGEEGETVAGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMATVEEAEKGVELFNRYSLEGRLLTVNKAAPRGTKFERPAQPASG-SKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVTDAIAALDGTELDGRPLRVNIAEDRSRRGF
A9NVB2_________________AASIRKRGGVKRAPVMANASEWEQDVGVKTQEEGEEG-AGDGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAEDR-RRGF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
552	90		10		0.90298
554	90		10		0.90298
934		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain