SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1738

Length: 913 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1738

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23338	2/18
SustainPine v2.0	sp_v2.0_unigene25621	16/18

Source	Descriptions	Term	Type	Identity
AutoFact	15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH	-	-	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	76%
Blast2go	dna-directed rna polymerase ii subunit rpb4	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	87%
Blast2go	Pyrimidine metabolism	00240	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	87%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	87%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase II, Rpb4	IPR005574	-	0.0	-
Sma3	RNA polymerase II, Rpb4, core	IPR006590	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
124	25	75			0.996473
127			25	75	0.996473
128		75	25		0.996473
155	20	80			0.995493
156		80		20	0.995493
158	80		20		0.995493
206	20			80	0.995493
207		80		20	0.995493
208		80	20		0.995493
210	80		20		0.995493
258	16	83			0.994512
262			16	83	0.994512
392	12			87	0.992554
394		87	12		0.992554
396	87		12		0.992554
470	85		14		0.993533
481	85			14	0.993533
486	85		14		0.993533
548	83		16		0.994512
745	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain