SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1731

Length: 1389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1731 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10752	36/54
SustainPine v2.0	sp_v2.0_unigene17591	13/54
SustainPine v2.0	sp_v2.0_unigene22280	3/54
SustainPine v2.0	sp_v2.0_unigene25843	2/54

Source	Descriptions	Term	Type	Identity
AutoFact	allene oxide cyclase [Pisum sativum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	allene oxide cyclase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Allene-oxide cyclase.	EC:5.3.99.6	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	84%
Blast2go	allene-oxide cyclase activity	GO:0046423	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Allene oxide cyclase	IPR009410	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ9

Fln msg:

Fln protein: MAAAGTATSILSKSSLGNNKGLVRLVRSNSEINNIGLRPATCFNPLKGDIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFYTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYTQ*

Protein Length: 278

Fln nts: ATGGGGATGTCTTTGGGCAGCGGACCAGAGCAGACCAGCGATATATTTGTGCACTGCTAGACCCCTATGCCGACCCTTTGGAAGTCCTCCTTTGTTTTTCTTAGTGTTTGCCCTACCCTGTATTTAGCTTCGTCTTCTGCGCTCCTTTAGATCTTCTATCTCCCCCTCCATCGTCATCTCAAGCAAAGGAGACATCCTCAGGGTGGTTCAGGGTGCTTCTTGTTTCTGATTCTGATTCTGATTCATCATCTCCCTGAACTGAATTCACCCCCACCCGATCCC_-_ATGGCTGCTGCTGGCACTGCCACCTCGATCTTATCAAAATCATCCTTAGGAAACAACAAAGGCCTGGTTCGATTGGTTCGTTCAAACTCAGAGATCAACAATATAGGCTTAAGACCTGCTACTTGTTTTAACCCTTTAAAGGGTGACATTTTTGGGGCACAGTTGGCTCCAAAGATGGTGATGACTGAGAGGCAAATCCAGTTTGACAACTCCTCTCTGGTGCGAGTGCGGGCAGAAGCAAAGGTATCAATGTCACTTCGACATCGAGTCAAAGCCAACGCTGCTTCTGCTCAAGGCCCTCCAAGCAGCTCTGTGCAGGAATTACATGTGTATGAGATCAATGAGTTGGACAGAGGGAGCCCTGCTTACCTTCGTCTGAGTCAGAAGCCCGTCAATAATCTGGGAGATCTAGTGCCATTTAGCAACAAGTTGTACAGTGGCAATCTGCAGAAACGTATAGGTATAACAGCTGGGCTCTGTATCCTTATCCAGCATTTTCCTGAGAAGAACGGAGATCGTTATGAAGCAATCTACAGCTTTTACTTCGGAGATTATGGCCATATTTCTGTGCAGGGGCCTTACCTTACATATGAGGAATCATACCTAGCAATTACTGGGGGTTCTGGCATATTCAGTGGAGTTCGTGGGCAAGTAAAGTTAAAACAGATTGTCTTTCCTTTCAAGTTATTCTACACTTTTTACTTAGAGGGCATTCCAAGCCTGCCCGAAACTCTGCTGGGTGAGCCTGTATTTCCAACACCGGATGTGGAGCCATCTCCCGCAGCAAAGAATGTAGAAGCTCATGCCTGCTTGCCCAACTATACCCAGTAA___TTAACTTACTTTACCTGCAATGAATAACAGGCCTGCAACCCTAAATAAATAATATATTCTTAGTAATGTGTTTTTAATTCACTGCTGGTAGTGGTCAGGGTATAATGTCAGCCAAGGTACAAGAAAATAGAGGGCAGGTTCATGTTGCTTGACCTTCACCTTCATCGCTCTTTTCAATATGTACCTTGACTTTGTGAATCCACTATTACTATATATCTTATGTGAAGATGATGTATCAAATGTTAATTAAACATATATATATTTGGAGTATGAAAT

Fln Alignment:

Contig1731___MAAAGTATSILSKSSLGNNKGLVRLVRSNSEINN---IGLRPATCFNPLKGDIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFYTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYT
D5ABJ9_________________MAATGTATSISLKSSLGNNKSLLQLVCSNSEGNNTNSIGFKPATCFKLLKGEIFGAQLA-----TERQIQFDSSSLVRVRAGAEASISIRRRVKANASSVQGPPSGSVQELYVYEMNELDRGSPAYLRLSQKPVNHLGDIVPFSNKLYSGNLQKRLGITAGICILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLTITGGSGIFSGVHGQVKLKQIVFPFKLFYTFYLEGIPSLPEDLLGEPVSPTPDVEPSPSAKNEEPHACLPNYT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
807		18		81	0.999994
892	90	10			0.90298
893		10	90		0.90298
895			90	10	0.90298
963		20	80		0.999996
1182		12		87	0.992554
1183		12	87		0.992554
1185	87	12			0.992554
1225	83		16		0.999991
1226	16		83		0.999991
1289		12		87	0.992554
1290	42	14		42	1.0
1292			85	14	0.993533
1297	83		16		0.994512
1307	16		83		0.994512
1323		50	50		1.0
1324		50	50		1.0
1327	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1146	1166	GAATCA GAATCA GAATCA GAA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain