SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1714

Length: 1111 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1714

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25407	12/19
SustainPine v2.0	sp_v2.0_unigene29562	7/19

Source	Descriptions	Term	Type	Identity
AutoFact	methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref\|NP_974850.1\| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref\|NP_001190421.1\| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp\|Q8LA53.1\|MBD2_ARATH RecName: Full=M	-	-	54%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	methyl-cpg-binding domain protein 02	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cytosine C-5 DNA demethylase activity	GO:0051747	Molecular Function	70%
Blast2go	enzyme binding	GO:0019899	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyl-CpG DNA binding	IPR001739	-	0.0	-
Sma3	Zinc finger, CW-type	IPR011124	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8LA53

Fln msg: your sequence is shorter than subject: 249 - 272

Fln protein: DSASVSDPIIVQESPFNDLSMPRDASRRVLPSVGAFTVQCARCFKWRLIPTKEQYEAIRHCILEDPWVCENAYPWRPDASCDDPADISQDKSRLWAIDKPNISQPPLDGKDCLSLEVKMHPSLLMCTMLLHQGRSYVQW*RLKVSDRNPEYLEAGVNLSQFSYQIPKPLHEGYVRKRSASATSGADVGPKKKMKAISDVERNQKTTQAKPLSWRKPDSSSNLGMNSSIFGNDYHEGSNYNQSVQPGTS*

Protein Length: 250

Fln nts: AGATTCTGCCTCTGTTTCAGATCCCATTATTGTACAAGAAAGTCCATTTAATGATTTATCAATGCCAAGAGATGCTTCAAGACGGGTTTTACCTTCTGTAGGGGCATTCACCGTCCAGTGTGCAAGGTGCTTCAAGTGGAGGTTAATTCCAACCAAAGAGCAATACGAAGCTATACGACACTGCATTCTGGAAGATCCTTGGGTGTGTGAAAATGCTTATCCCTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCTCAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCCCCCCTGGATGGGAAAGATTGCTTGTCATTAGAGGTCAAGATGCATCCAAGTTTGCTGATGTGTACTATGTTACTCCATCAGGGAAGAAGTTACGTTCAATGGTAGAGGTTGAAGGTTTCTGATAGAAATCCAGAATATTTAGAGGCAGGAGTAAATCTTTCACAGTTCTCCTATCAAATTCCTAAGCCACTTCATGAAGGCTATGTGAGAAAGCGCTCAGCTAGTGCTACATCCGGGGCTGATGTGGGTCCAAAGAAGAAAATGAAAGCTATCTCCGATGTTGAAAGAAATCAGAAAACTACACAAGCAAAACCCCTATCATGGAGGAAGCCTGATTCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGGGAATGACTATCATGAGGGGTCTAACTACAACCAGTCAGTGCAGCCAGGTACATCTTAG___ATCCATTAAGTGGTTGCTGTTTGTATCGTGTATTCACCGTGCTAGCTGAGGAGTGATACTTTCCGATCACGCTGCAGATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAACGGTCAAGTCGCATGAAACTTGAGAGCTATGAGACCCTGAGTGGTTAGGGACACACTGGAAACTTTCTGTGATGACACCATCTCTATGCTTTTTGAAGTATAGCATATGGTGGTAGCATCTTATTGGCTTGTATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTCGAGGCGGTGGCATTTTGATCCTAAATTTTGGTTTTGGAGTACATGTTTGTTCATATTAGAC

Fln Alignment:

Contig1714___ASRRVLPSVGAFTVQCARCFKWRLIPTKEQYEAIRHCILEDPWVCENAYPWRPDASCDDPADISQDKSRLWAIDKPNISQPPLDGKDCLSLEVKMHPSLLMCTMLLHQG---RSYVQW*RLKVSDRNPEYLEAGVNLSQFSYQIPKPLHEGYVRKRSASATSGADVGPKKKMKAISDVERNQKTTQAKPLSWRKPDSSSNLGMNS
Q8LA53_________________SSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVE--VQKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKR-----------PARLLDSI-DNTNTPVAKEANPLAWISPDDHISLQLGT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
616	85		14		0.993533
617		85		14	0.993533
620	14	85			0.993533
621	85			14	0.993533
622		85		14	0.993533
623	71	14	14		0.984337
826	75		12		0.975346
975	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain