SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1684

Length: 1829 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1684 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15487	52/100
SustainPine v2.0	sp_v2.0_unigene60373	36/100
SustainPine v2.0	sp_v2.0_unigene60443	5/100
SustainPine v2.0	sp_v2.0_unigene61272	7/100

Source	Descriptions	Term	Type	Identity
AutoFact	aspartic proteinase [Theobroma cacao]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	aspartic proteinase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin	IPR008373	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg:

Fln protein: MEWRRILLCFVVSLYFFSSVSCADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGFESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPVTRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTKDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEAV*

Protein Length: 515

Fln nts: AGTGGGGATCGTAGTAGCAGAGCAGTTCGCTGGGGATCGCATCCAGAAAAGCTTTGAAT_-_ATGGAGTGGAGGAGAATACTCTTGTGTTTCGTAGTTTCGTTGTATTTTTTCTCTTCTGTTTCTTGTGCTGATGATGGACTTGTAAGGGTCGGGCTGAAGAAGAAGTCTCTGGATCTTAAAACCCTACGGGCTGCTAAAGCTTCGATGCGTAACGGCTGTCATGCGGACGCACTCATTCGGAAATTTGGTCTGCGCGAAGGTCGGGGTTTCGAGTCTGACGAGGGCGATTATGTTCCTTTGAAGAATTACTTGGACGCTCAGTATTTCGGAGAGATTGGAATTGGAACTCCAGCTCAGACTTTTACGGTCATATTTGATACCGGCAGCTCAAATCTTTGGGTGCCGTCTTCTAAATGTTACTTCTCGTTGGCTTGCTATTTCCATTCAAAGTACAAGGCATCCGAGTCAAGCACCTACAAAAAGAATGGAAAATCCTGTGATATTCAGTATGGAAGTGGTGCAATCTCTGGATACTTGTCTCAAGATGATGTCACAGTAGGGGACCTTGTTGTGAAAGACCAGGTTTTTACCGAGACAACACGGGAGCCAAGTCTAACATTCTTACTGGCCAAGTTTGATGGTCTTCTTGGGCTTGGATTTCAAGAAATTGCTGTTGACAAAGTTGTTCCAGTCTGGTATAACATGGTCAGCCAAGGGCTTGTCAAAGAACCAGTCTTTTCATTTTGGATGAACAGGAATTCAGAAGAGGAAGCTGGAGGAGAGATAGTATTTGGCGGTGTTGATCCTGAACACTTCAAGGGTGAACATCAGTATACACCTGTTACTCGAAAGGGTTACTGGCAGTTTGATATGGGAGACTTCCTCATTGATGATCAATCAACAGGTTTCTGTGCTGGAGGTTGTGCTGCTATTGTAGATTCTGGAACTTCTTTGCTCGCTGGTCCATCGGGCATTATAACACAAATTAACAATGCTATTGGTGCCTCGGGTATTATTAGCCAGGAATGCAAAACAGTAGTATCACAATACGGAGATGTGATTATGGAGCTCTTGATGGCACAGACAAATCCTCAGAAGATCTGCTCACAGATTGGCTTGTGCTCTTATGATGGTACAAAAGATGTTAGCACAGGAATAGCTAGTGTCTTGGAAAAATCCGGTGAAAAGGATACAATGTCGAGCATCGGTGATGGTATGTGCACTGCTTGTCAGATGGCGGTTGTGTGGGTGCAGAACCAAATTGCTCGTAACCAGACTAAGGAGCAGATTAAGGCCTATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCATTTTCGATTGGAAATAAAACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCTGTAGCGCAGTGTGTAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGA___AGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGAAATATTTTTAAGACAGGAAAGATTATGTATATAGTTAAATATTTTGCTTAAAATCTAGAT

Fln Alignment:

Contig1684___ADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGF-ESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPVTRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTKDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEA
B8LKS9_________________ANDCLARIELKKKGLDQKTLQAARIVAREGGLSNEVNRKYGLRGGLSYSESARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEKGNEATSTSS--SGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1732	75	25			1.0
1734		25	75		1.0
1736	75			25	1.0
1772	50	50			1.0
1779	25		75		0.996473
1826	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain