SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1629

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1629 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3926	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-amylase [Arabidopsis thaliana] gb\|AAN71908.1\| putative beta-amylase [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	inactive beta-amylase 4	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	66%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	66%
Blast2go	Metabolic pathways	01100		0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	66%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
168	87			12	0.992554
173			87	12	0.992554
175	87			12	0.992554
176	87	12			0.992554
178	87	12			0.992554
180	12		87		0.992554
260		33		66	1.0
261		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain