SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1619

Length: 609 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1619

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16367	16/70
SustainPine v2.0	sp_v2.0_unigene17432	47/70
SustainPine v2.0	sp_v2.0_unigene60982	7/70

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S29 n=4 Tax=Magnoliophyta RepID=RS29_ARATH	-	-	2.0e-23	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	40s ribosomal protein s29	-	-	5.37615e-37	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	5.37615e-37	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S14	IPR001209	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
73	88		11		0.999952
74			88	11	0.999952
75			11	88	0.999952
76	11			88	0.999952
77		88	11		0.999952
79	11	88			0.999952
81	88		11		0.999952
82	88		11		0.999952
84			11	88	0.999952
85	11			88	0.999952
86	11		88		0.999952
91	11			88	0.999952
92			88	11	0.999952
93	11		88		0.999952
94		11		88	0.999952
95	11		88		0.999952
96	88		11		0.999952
99	11			88	0.999952
100	11			88	0.999952
101	11		88		0.999952
102	11			88	0.999952
103	88	11			0.999952
486			70	30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain