SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1586

Length: 1645 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16036	48/60
SustainPine v2.0	sp_v2.0_unigene16806	11/60
SustainPine v2.0	sp_v2.0_unigene63997	1/60

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding protein [Medicago truncatula]	-	-	8.0e-29	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	rna-binding protein with multiple splicing	-	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSM7

Fln msg:

Fln protein: MGDAYWRYAAERGGLPPAAGIDLAGMAGRDYPGFLPRENSQPTGRDLPGYLPRESSQPVGRDIPGYLPRENPQLNDRIAHAMYRAYDPLAPSETLRNGISPYGSGGLTASEIGSLGGSSGIGLGGLSGGLGPGGGSRINLATGAGLLGPAPPLDDPILMGQRQGGVGIDPALAGKSGSSEFYSARTDVSLKLPDSAMSGSSFKLPDHLKPDATANTIFIEGLPPDCTRREVAHIFRPFIGYKQIKVVHKEPRRADGEPYVLCFVEFADAKCALTALNALKGYKFDEHEQDSNPLSLQLAHFPGSRPAVAPLRDELLRGSHEADELRSSIRH*

Protein Length: 333

Fln nts: ATGGGGCTTTTGTCTCTCCAGATTCTCACAGGGCAAACTCAAGTGTGGTTAGACCACATTGTGCGGTGAAGTCAAGCCAAAGCAGCGCGCAGGGGTTTAAAAGAGATATATGTAGAGAAATAAATGTACCAATTTTGCTAGGTCATATTTTCTGTTTCATATTGGAGCTCCGCTTGTTTGAAGTTGAGGTTTTTGCATAGGCATATCTGTAAACG_-_ATGGGAGACGCGTACTGGAGATACGCAGCTGAGAGAGGTGGTCTTCCACCAGCTGCTGGTATTGACTTAGCTGGCATGGCTGGTCGTGATTATCCTGGTTTTTTGCCTCGTGAAAACTCTCAACCAACTGGTCGTGACTTACCAGGCTATCTACCTCGTGAGAGCTCTCAGCCAGTTGGTCGTGATATTCCTGGTTATCTGCCTCGTGAAAATCCTCAGCTCAATGACAGAATTGCTCATGCAATGTACAGGGCATATGACCCACTTGCTCCTTCTGAAACTCTACGAAATGGGATATCTCCATATGGTTCAGGTGGTTTAACTGCAAGTGAGATTGGCAGTTTGGGTGGCAGTTCTGGAATTGGGTTGGGTGGATTATCTGGGGGGTTAGGTCCAGGAGGTGGTTCTAGGATTAATTTAGCTACAGGTGCAGGTTTGCTAGGACCAGCACCTCCTTTGGATGATCCAATTTTGATGGGGCAGAGGCAAGGAGGGGTTGGCATAGATCCTGCTCTTGCTGGAAAGTCTGGGAGTTCAGAATTTTACAGTGCCAGGACAGATGTGTCTTTAAAACTGCCTGACAGTGCAATGTCTGGTTCATCTTTCAAGCTACCTGATCATCTTAAGCCTGATGCAACTGCCAATACAATATTTATTGAGGGGCTTCCTCCCGACTGTACTCGCAGAGAAGTTGCCCACATTTTCCGCCCTTTTATTGGTTATAAGCAAATCAAAGTCGTACACAAGGAGCCTAGACGAGCTGATGGGGAGCCTTATGTTCTGTGTTTTGTGGAGTTTGCTGATGCAAAATGTGCTCTAACTGCTCTAAATGCTCTAAAAGGGTACAAGTTTGATGAGCATGAACAGGATTCAAATCCTTTATCTCTCCAGCTTGCACATTTTCCTGGCTCACGTCCTGCTGTTGCTCCCCTTCGTGATGAACTACTTCGTGGTAGCCATGAGGCTGATGAGCTTCGCTCTAGTATTCGCCATTGA___TCTATCTACTACATTGACAGGATGCTTGTGGAATATCTGGCATCCTTTGGCATGCACGATAAACTGGATCCAGCATTAATCAGCTGTCAGACATGAAGGATTTGTGGTGAGTTGTGACCTCTAATTGCCTTTGACACCGGCTCCAGATTCTACTTTTGAAGGGGAGTTTACCTGTGTGCATTGTGCCAATATTTGCAGCTGCATTGGCTTCTTTTTTGAAAATCTAGAAACTAGAAAAATATTCAGGGAACAAATTTTTATATTTCCTAGACTGTGGTTACTTGGGGTAATGCATTTCTGGATCAAAGTTTATATTAATTTGTGAAGCATGTCCTGAACCATATATTTTGACACTAACTAGAGGTCACAATATCCTATATTATAGGAACTTTTTACTGATGAATGTTATGTTGATCTCTCTGGACATGGATGAT

Fln Alignment:

Contig1586___MGDAYWRYAAERGGLPPAAGIDLAGM-AGRDYPGFLPRENSQPTGRDLPGYLPRESSQPVGRDIPGYLPRENPQLNDRIAHAMYRAYDPL-APSETLRNGISPYGSGGLTASEIXXXXXXXXXXXXXXXXXXXXXXXXRIN----XXXXXXXXXXXXXXDDPILMGQRQGGVGIDPALAGKSGSSEFYSARTDVSLKLPDSAMSGSSFKLPDHLKPDATANTIFIEGLPPDCTRREVAHIFRPFIGYKQIKVVHKEPRRADGEPYVLCFVEFADAKCALTALNALKGYKFDEHEQD-SNPLSLQLAHFPGSRPAVAPLRDELLR
C0PSM7_________________MGDAYWRYAAERGGLPPAGGLDLAGIQTSRDYPGYLPRESSQPTGRDFPGFLPREISQPVGRDIPGYLPRENPQLNDRIAHSMLRTHDPLGAPSETLRNGISPYGAGGLTASEISSLGGGSGIGVGGLSGGVGPGGGSRIGLGGVAAGAGAGLLGPAPLNDPVLMGQRQGGVGIDPALA-----------------RLPDSAISGSTFRLPDHLKPDESSNTIFIEGLPADCSRREVAHIFRPFIGYKQIKVIHKEPRRAGGEPYVLCFVEFTDAKCALTALSALKGYKFDEHEHDSSSSLKLQLANFPGSRPAVTPLRDELLR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1053	90		10	0.90298
1055	80	20		0.999996
1260		63	26	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain