SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1565

Length: 1357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1565 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19388	1/21
SustainPine v2.0	sp_v2.0_unigene20827	5/21
SustainPine v2.0	sp_v2.0_unigene30617	15/21

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin fusion degradation protein n=1 Tax=Elaeis guineensis RepID=B3TLZ5_ELAGV	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ubiquitin fusion degradation 1	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin fusion degradation protein UFD1	IPR004854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG2

Fln msg:

Fln protein: MFFDGYGYPATSFEQTYKCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELHNPATHRRSHCGVLEFVGEEGMIYMPYWMMQNMLLEEGDTVNVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETTLRNFSCLTSGDSIMVAYNNKKYYIDIIETKPASAITIIETDCEVDFAPPLDYKEPERVPALPAPAAKTTTTQEESKDVEETKFTPFTGVGRRLDGKPLKYSVAPLTETTSHPTNNKTSGPGSSAGTSQRHASGKLVFGSGTGSTSTDASKEPVKEVKQEVPKEEPKFQAFSGKKYSLKD*

Protein Length: 316

Fln nts: ATGGGGACACTTGAACATCCAATTCATAGAAATAGGTAGGGGATCATCAAAGCAGGAGCAGAGGAAACAGAATGAAACGAGAAACGAAGAACAACTAATAATTGCTCATACACACAGCTTCTCTGCAAAGCTCATGATCGCGAGGACGTCCTTGGTATTGGAAGGAAGAGGATCTGGGTGGGTTAGGGTTTCGAAATTAGCATAGTCGATCTCTTTCCCATACGCTAACGTTGTCAGTGTGGACGGGTTTGGCGACTAACAGCGTTGTTACACCCCGTTTCTGAGGTTGGGTTCGGCTCACCAGAATCTGTTATTGGAAGGCTGAACAGATTGGGTGACTAGACTATTTTCACA_-_ATGTTCTTTGATGGTTATGGATATCCTGCAACATCGTTCGAGCAGACTTATAAATGTTATCCAGCATCTTTTATTGAAAAGCCTCAACTGGAAAGTGGTGACAAAATTATAATGCCCCCTTCAGCTCTTGATCGTCTGGCATCATTACACATAGACTATCCAATGCTCTTTGAGCTTCATAATCCTGCAACACACAGAAGATCACACTGTGGAGTGCTTGAATTTGTTGGGGAGGAGGGCATGATTTATATGCCATATTGGATGATGCAAAATATGCTTTTAGAAGAGGGTGACACGGTGAATGTGAAAAATGCCACCCTTCCAAAAGGGACATATGTTAAGCTACAACCCCATACAAAGGATTTTCTTGACATTTCTAATCCAAAAGCTGTGTTGGAGACCACCTTAAGGAACTTTTCCTGTTTGACCTCAGGTGATAGTATTATGGTAGCTTACAACAACAAGAAATACTATATAGACATAATTGAGACAAAACCTGCTTCTGCAATAACTATTATTGAGACAGATTGTGAGGTGGATTTTGCTCCTCCTCTTGATTACAAAGAACCTGAAAGAGTGCCAGCCTTACCTGCTCCTGCTGCAAAGACAACAACAACTCAAGAGGAATCAAAAGATGTGGAAGAAACTAAATTTACTCCCTTTACTGGAGTTGGAAGGCGTCTGGATGGGAAACCACTAAAGTATTCAGTAGCACCATTGACAGAAACGACATCCCATCCTACAAACAATAAAACATCGGGGCCTGGTTCATCTGCAGGCACTTCACAACGCCATGCCTCAGGGAAGCTTGTATTTGGTTCGGGCACAGGAAGTACTTCTACGGATGCCTCTAAGGAACCTGTGAAGGAGGTCAAACAGGAGGTACCAAAGGAAGAACCCAAGTTCCAGGCATTTAGTGGCAAGAAATATTCACTGAAGGATTGA___AGGGTGCAGATCACAACTTTTGTTCTTTGTGATAATGGCTGTAACCTTGTCCTAATTT

Fln Alignment:

Contig1565___MFFDGYGYPATSFEQTYKCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELHNPATHRRSHCGVLEFVGEEGMIYMPYWMMQNMLLEEGDTVNVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETTLRNFSCLTSGDSIMVAYNNKKYYIDIIETKPASAITIIETDCEVDFAPPLDYKEPERVXXXXXXXXXXXXTQEESKDVEETKFTPFTGVGRRLDGKPLKYSVAPLTETTSHPTNNKTSGPGSSAGTSQRHASGKLVFXXXXXXXXTDASXXXXXXXXXXXXXXXXKFQAFSGKKYSLKD
D5ACG2_________________MFFEGYGYPATSFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELHNPATQRRSHCGVLEFIAEEGMIYMPYWMMQNMLLEEGDTVKVKNATLPKGTYVKLQPHTKDFLDISNPKAVLETTLRNFSCLTTGDSIMVAYNNKKYYIDIIESKPASAITIIETDCEVDFAPPLDYKEPERVPAVPAPAAKTTATQEESKDVEEPKFTPFTGVGRRLDGKPLKYSVAPLTETTSHLTNNKTSGPGSSAGTSQRHASGKLVFGSGTGSTSADASKEAVKEVKQEVPKEEPKFQAFTGKKYSLKD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
959		33		66	0.997452
1057		20		80	0.995493
1058		20	80		0.995493
1059	20		80		0.995493
1302		50	50		1.0
1304		50		50	1.0
1306	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain