SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1516

Length: 543 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1516
ATGCAGGGACTGCCATATTTTTTGATCCAGGACCGCGTAACAAATCCCTTCTTCATGGGACTCCTGAGCAACAAGCAACACTTCAAAAGATTCTGAGCATAAGTGATGTTCTTCTTCTCACTGCTGATGAGGCTGAGTCATTGACTGGACTTGCAAACCCTGCTTTGGCTGCACAAAATTTACTTCATAGAGGACTTTTCACCAAGTGGGTAATTATCAAAATGGGTTCTGGAGGATCAATGATGGTGACATCAAAAGGATTGTTCTATGCACCTGCATTGAAGGTTGATGTTGCAGATACTGTAGGATGTGGAGATAGCTTTGCAGCTGCTATTGTTGTTGGTTATATAAATTTGATGCCTATGATAACCACTCTAGTATTGGCAAATGCTGTTGGTGGTGCTACAGCAATGGGCTGTGGGGCAGGCCGGAATGTTGCTACCAAAGAAAAAGTTTGTGAACTGCTATTGGCTTCAGAAGTAAACAATGACTACGAGGATTTCTCGGAGAAGAATACGCGCCCCTGAGTATTTAGCAAGTCTG

Ace file of the UniGene biog2_v2.0_unigene1516 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1949	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana] gb\|AAK32830.1\|AF361817_1 At1g06730/F4H5_22 [Arabidopsis thaliana] gb\|AEE28029.1\| pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	63%
Blast2go	pfkb-type carbohydrate kinase family protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	70%
Blast2go	kinase activity	GO:0016301	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase	IPR000477	-	0.0	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GS52

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 41 aas, your sequence is shorter than subject: 175 - 349

Fln protein: AGTAIFFDPGPRNKSLLHGTPEQQATLQKILSISDVLLLTADEAESLTGLANPALAAQNLLHRGLFTKWVIIKMGSGGSMMVTSKGLFYAPALKVDVADTVGCGDSFAAAIVVGYINLMPMITTLVLANAVGGATAMGCGAGRNVATKEKVCELLLASEVNNDYEDFSEKNTRP*

Protein Length: 176

Fln nts: ATGCAGGGACTGCCATATTTTTTGATCCAGGACCGCGTAACAAATCCCTTCTTCATGGGACTCCTGAGCAACAAGCAACACTTCAAAAGATTCTGAGCATAAGTGATGTTCTTCTTCTCACTGCTGATGAGGCTGAGTCATTGACTGGACTTGCAAACCCTGCTTTGGCTGCACAAAATTTACTTCATAGAGGACTTTTCACCAAGTGGGTAATTATCAAAATGGGTTCTGGAGGATCAATGATGGTGACATCAAAAGGATTGTTCTATGCACCTGCATTGAAGGTTGATGTTGCAGATACTGTAGGATGTGGAGATAGCTTTGCAGCTGCTATTGTTGTTGGTTATATAAATTTGATGCCTATGATAACCACTCTAGTATTGGCAAATGCTGTTGGTGGTGCTACAGCAATGGGCTGTGGGGCAGGCCGGAATGTTGCTACCAAAGAAAAAGTTTGTGAACTGCTATTGGCTTCAGAAGTAAACAATGACTACGAGGATTTCTCGGAGAAGAATACGCGCCCCTGAGTATTTAGCAAGTCTG

Fln Alignment:

Contig1516___GTAIFFDPGPRNKSLLHGTPEQQATLQKILSISDVLLLTADEAESLTGXXXXXXXXXXXLHRGLFTKWVIIKMGSGGSMMVTSKGLFYAPALKVDVADTVGCGDSFAAAIVVGYINLMPMITTLVLANAVGGATAMGCGAGRNVATKEKVCELLLASEVNNDYEDFSE
B9GS52_________________GTSIFFDPGPRGKSLMTGSPEERQALRHFLKMSDVLLLTSDEAESLTGIGNPILAGKELLKNGIRTKWVIVKMGSKGSILVTMSSISCALAFKVNVIDTVGCGDSFVAAIAFGYIHNMPLVHTLAIANAVGAATAMGCGAGRNVATLDKVTELMRASDINEDDEFWSE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
336		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain