SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1503

Length: 243 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1503
ACAAAGCGTGCGCGTGAGACTAATAGCCAAAGATATCATAGAAGCATTACAAAGGGGAACAAGACACCAGGAAAGCTGGAATGATGTTGTCTATACTAACACACAAACCATTCCATCTGATGCTCATACTAGTCAGGATCCCTGGGGCTTAAGGAGCGAAAAAGAATATAAAGAAGAACAGCTGTATAACAATGATGAAATCCTAGATGACAAATGGGTTGAGAAGAGTCGCAGGTCGGGAAA

Ace file of the UniGene biog2_v2.0_unigene1503 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18418	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase, putative n=1 Tax=Ricinus communis RepID=B9R9L4_RICCO	-	-	64%
FL-Next	tr=Peptidase, putative; Ricinus communis (Castor bean).	-	-	45%
Blast2go	peptidase m48 family protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R9L4

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 80 - 482

Fln protein: QSVRVRLIAKDIIEALQRGTRHQESWNDVVYTNTQTIPSDAHTSQDPWGLRSEKEYKEEQLYNNDEILDDKWVEKSRRSG

Protein Length: 81

Fln nts: ACAAAGCGTGCGCGTGAGACTAATAGCCAAAGATATCATAGAAGCATTACAAAGGGGAACAAGACACCAGGAAAGCTGGAATGATGTTGTCTATACTAACACACAAACCATTCCATCTGATGCTCATACTAGTCAGGATCCCTGGGGCTTAAGGAGCGAAAAAGAATATAAAGAAGAACAGCTGTATAACAATGATGAAATCCTAGATGACAAATGGGTTGAGAAGAGTCGCAGGTCGGGAAA

Fln Alignment:

Contig1503___QSVRVRLIAKDIIEALQRGTRHQESWNDVVYTNTQTIPSDAHTSQDPWGLRSEKEYK-EEQLYNNDEILDDKWVEKSRRSG
B9R9L4_________________ESVRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEATGRETLRALTENEEKVETKWYKEDEVLDDNWIQHSRKKG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
153		20	80		0.995493
154	80	20			0.995493
157	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain