SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1501

Length: 232 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1501
GAAGCACATCCAGAACTAACTAAGGTACTGGAATTTATCCATTTTTCTTGCACATCTGAGGACATCAATAATTTTAGCTCATTCTTTTGATGTTGCGTGAGGCTCTAGATCTAGTTATATTGCCCAGTATGGACCAGTTAATTGATGCCATACGCAATTTAGCGCACAAATATGCTCACATCCCAATGTTATCTCGGACACAATGGGCAGCCAGCTTCGCCAACTACATTGG

Ace file of the UniGene biog2_v2.0_unigene1501 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3055	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	adenylosuccinate lyase [Nicotiana tabacum]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	adenylosuccinate lyase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylosuccinate lyase.	EC:4.3.2.2	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	83%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	IMP biosynthetic process	GO:0006188	Biological Process	83%
Blast2go	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	GO:0004018	Molecular Function	83%
Blast2go	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	GO:0070626	Molecular Function	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Adenylosuccinate lyase C-terminal/plant	IPR013539	-	-
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Adenylosuccinate lyase	IPR004769	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV0

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 275 aas, your sequence is shorter than subject: 77 - 556

Fln protein: EAHPELTKVLEFIHFSCTSEDINNFSSFF*CCVRL*I*LYCPVWTS*LMPYAI*RTNMLTSQCYLGHNGQPASPTTL

Protein Length: 78

Fln nts: GAAGCACATCCAGAACTAACTAAGGTACTGGAATTTATCCATTTTTCTTGCACATCTGAGGACATCAATAATTTTAGCTCATTCTTTTGATGTTGCGTGAGGCTCTAGATCTAGTTATATTGCCCAGTATGGACCAGTTAATTGATGCCATACGCAATTTAGCGCACAAATATGCTCACATCCCAATGTTATCTCGGACACAATGGGCAGCCAGCTTCGCCAACTACATTGG

Fln Alignment:

Contig1501___EAHPELTKVLEFIHFSCTSEDINNFSSFF*CCVRL*I*LYCPVWTS*LMPYAI*RTNMLTSQCYLGH-----------NGQPASPTTL
B8LLV0_________________EAHAELTKVLEFIHFSCTSEDINNLAH----ALMLRDALDLVILPS--------MDQLIDAMCNLAHKYAHIPMLSRTHGQPASPTIL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
185		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain