SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1451

Length: 1154 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1451

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6059	39/41
SustainPine v2.0	sp_v2.0_unigene21477	1/41
SustainPine v2.0	sp_v2.0_unigene80271	1/41

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	heterogeneous nuclear ribonucleoprotein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN8

Fln msg: atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 242 - 264

Fln protein: MDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASFGAPYMQSYGPTPVGAYGTRPPIAGTGYPPYAAAPGYGPTGYGSTAGYGTSMNGGYGATPVYAAAAGYAGGAAGSYGAGFSNAPGSTTYGTGTAGYAATPVPAPYGNAPVARTGWGATAGSPGYAAAGAGSWGSAAPSGQPAGAAPGYGYASSDAGYGSRGDSGYMQASSGYGPPSGGANAGGYPGGYGDTHGNAGYGNS*

Protein Length: 243

Fln nts: AGGAGAAGCACACTATCGACGGCAGAAC_-_ATGGACAAAGTTCTTCAGCAGACATTTCACCAGCTCAAGGAAAAGACTGTGGAGGTGAAGCGGGCCATTCCCAAGGACATGTCTCCAGGAAATACAAGAGGTTCTGCAGGACGTGGAGCTAGTTTTGGTGCACCATATATGCAAAGCTATGGACCAACTCCTGTTGGGGCTTATGGAACACGCCCGCCTATTGCAGGTACGGGATATCCTCCATATGCTGCAGCACCTGGCTATGGACCTACTGGGTATGGAAGTACAGCAGGGTATGGGACAAGTATGAATGGTGGATATGGTGCAACACCTGTATATGCAGCAGCTGCAGGCTATGCAGGAGGTGCAGCAGGATCTTATGGAGCTGGATTTAGCAATGCTCCTGGTAGCACTACGTATGGTACTGGAACTGCTGGTTATGCTGCTACTCCTGTACCTGCTCCCTATGGAAATGCTCCTGTTGCCAGAACTGGCTGGGGAGCCACTGCTGGCTCCCCAGGATATGCAGCAGCAGGAGCAGGTTCTTGGGGTTCAGCAGCTCCTTCAGGACAGCCTGCTGGAGCTGCTCCTGGTTATGGATATGCAAGTAGTGATGCTGGCTATGGCAGCAGAGGTGACAGTGGTTACATGCAAGCAAGCAGTGGTTATGGGCCTCCTTCTGGCGGAGCTAATGCAGGAGGCTATCCAGGAGGATATGGTGATACACATGGTAATGCTGGTTATGGAAACTCATAG___AAAACTACCCATATTTGAATAGTGCTGTAGTGCCATGGGCATGGAAAGAGAAGACTGGTACAATTGTAATGCTGTCGTTATTGATGGATCTAGTTATTTGTAATTGCAGTATATTTATTTTCTCCAAATTACTATGAAAAGGAGATTATTTGAACTACTATTACTCTCTTGTATCTTTCTCTTAAAAATGTTTTTGTAGTGCCAGCTAATATCTTTGCAGGTGATAGCTTTAAGAGAAGAGTTTGCAGGCATTGGCATAAGCCATTTTATGTGGCTCTGCTTTTGCAACCATGTTGTACGAAATCTTAGGTTAGATTTCAGGAGACTAGTTAGCTCAGTAGGGATTCACACCTCACTGATGTGGGTTTTGGCACTTCTAAGAATACCTTGAAGTTTCCTA

Fln Alignment:

Contig1451___MDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTXXXXXXXXXXXXPYMQ-SYGPTPVGAYGTRPPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNXXXXXXXXXXXXXXXXXXXXXXXXXXFSNXXXXXXXXXXXXXXXXXXXXXXXXNAPVARTGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXXXXXXXXXDTHGNAGYGNS
A9NUN8_________________VDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASYGAPYMQGGYGPTPVGAYGARPPIAGTGYPPYGAAPGYGPTGYGSTPGYGTSMNGGYGATPVYAAAAGYAGGAAGSYGAGFSNAPGSNTYGSGTAGYAATPVPAQYGNAPVARTGWGATAGSPGYAAGGAGSWGSAAPSGQPSGAAPGYGYASSDAAYGSRSDSGYMQASSGYGPPAGGASAGSYAGGYGDTHGNAGYGNS

SNPs (tot: 3)

Position	C %	T %	Probability
622	11	88	0.999937
869	14	85	0.993533
1027	25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain