SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1432

Length: 993 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1432

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15676	21/22

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein-like protein n=1 Tax=Solanum tuberosum RepID=Q2VCH8_SOLTU	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	mki67 fha domain-interacting nucleolar phospho	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT23

Fln msg: Overlapping hits, possible frame ERROR between 428 and 403,

Fln protein: MGNRAKKKAEETVGMDDFWPLEGNNINQVQTVPIKKQAQEKYPIASEKKNLLFCILGTYHTDxxxxxxxxxxSQFGAIKRLRIARNRKTGKSKHYGFIEFESPAVAEIVADCMHNYLLFEHILQVQLVPPEKIHTQLWKGSNRNFKPIKWQRIQMKHHNRKRTAKEQDHLMKAILKRDAKRRKKIEAAGIEYDYPDIIDGLPPVPKKIKFSDDEE*

Protein Length: 217

Fln nts: CTTAAGCGCCAGTGTGGGAAGATAGGGCATACCCCAGAAGGCAAAAGCTGGGGATTTCAGAGTCGTGTGTACCCTGTTAGGCGTAGTTGAAGCAGGAGCTAAAATCCTAAATTGGAAGGGACGAGATTTACCGAGGGAATAAGGTTCCTTCCTTTCTGGTTCGCCCTTCGCCCTTGGCGCCTCTGTTCTGACTTATTGCACACTTAGAGCGCAAA_-_ATGGGTAATAGGGCAAAGAAGAAGGCCGAGGAGACAGTTGGTATGGATGATTTTTGGCCTCTGGAGGGAAACAATATAAACCAAGTTCAGACTGTTCCTATAAAGAAACAAGCGCAGGAAAAATATCCAATAGCCAGTGAGAAAAAGAACCTACTGTTCTGTATATTGGGCACATACCACACGGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCAGTTTGGGGCAATCAAACGACTTCGAATCGCCCGGAACAGAAAGACTGGGAAGTCAAAGCACTATGGATTCATTGAGTTTGAGTCCCCTGCTGTTGCTGAAATTGTTGCTGATTGCATGCACAACTACCTTTTATTTGAACACATACTACAAGTTCAGCTTGTTCCACCTGAAAAGATTCACACACAGCTATGGAAGGGATCAAATCGCAACTTTAAGCCAATAAAGTGGCAGAGGATTCAAATGAAACATCATAATCGGAAGAGAACAGCAAAAGAGCAAGATCATCTGATGAAAGCAATACTGAAAAGGGATGCAAAACGTCGCAAGAAGATCGAAGCTGCTGGTATTGAATATGACTATCCAGACATTATTGATGGCCTTCCGCCTGTCCCAAAGAAGATCAAGTTCTCTGATGATGAAGAATGA___CGCGAACATGAGGAAAATTTCAGTTCATAGTTCATACAACCACAGTTTGAGCATTGTATCTGTACAATCAGAGCATCGTATCTGTACAATTAGATTTCCTTGATAGAACTTCCTATATACCAAGTATAAATC

Fln Alignment:

Contig1432___MGNRAKKKAEETVGMDDFWPLEGNNINQVQTVPIKKQAQEKYPIASEKKNLLFCILGTYHTDFxxxxxxxxFSQFGAIKRLRIARNRKTGKSKHYGFIEFESPAVAEIVADCMHNYLLFEHILQVQLVPPEKIHTQLWKGSNRNFKPIKWQRIQMKHHNRKRTAKEQDHLMKAILKRDAKRRKKIEAAGIEYDYPDIIDGLPPVPKKIKFSDDEE
A9NT23_________________MGNRAKKKTKEAAGVDDFLPLEGNNVNQVQSVPIKKQAQEKDPIFSAKKKPTVLYIGHIPHGFxxxxxxxxFSQFGAIKRLRISRNRKTGKSKHYGFIEFESPAVAEIVADCMHNYLLFEHILKVQLVPPEKIHPQLWNGSNRKFKPLKWQRIQMKHHNRERTAKEQDHLMKAILKKDAKRRKKIEAAGIEYDYPDITDGLPPVPKKIKFSDDQE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
167	16			83	0.994512
179			85	14	0.993533
214	88			11	0.923564
215	88		11		0.923564
216	88		11		0.923564
217			11	88	0.923564
291	87		12		0.992554
783		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain