SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1431

Length: 709 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1431 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2144	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 5NG4 n=1 Tax=Pinus taeda RepID=5NG4_PINTA	-	-	91%
FL-Next	sp=Auxin-induced protein 5NG4; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	auxin-induced protein 5ng4-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	80%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	80%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	80%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	80%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	80%
Blast2go	cell cortex	GO:0005938	Cellular Component	80%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	80%
Blast2go	positive regulation of tryptophan metabolic process	GO:0090358	Biological Process	80%
Blast2go	positive regulation of auxin metabolic process	GO:0090355	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
392		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain