SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1323

Length: 1331 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1323

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27932	20/24
SustainPine v2.0	sp_v2.0_unigene60889	4/24

Source	Descriptions	Term	Type	Identity
AutoFact	EPS15 homology domain 1 protein [Arabidopsis thaliana] ref\|NP_001030731.1\| EPS15 homology domain 1 protein [Arabidopsis thaliana] gb\|AAK59418.1\| unknown protein [Arabidopsis thaliana] gb\|AAO42408.1\| unknown protein [Arabidopsis thaliana] dbj\|BAH19984.1\| A	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	eps15 homology domain 1 protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	endocytosis	GO:0006897	Biological Process	88%
Blast2go	endosome	GO:0005768	Cellular Component	88%
Blast2go	microsome	GO:0005792	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EPS15 homology (EH)	IPR000261	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM82

Fln msg:

Fln protein: MRVYGALMWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRKFRNPYD*

Protein Length: 179

Fln nts: GAAGGTTTCATTGAACTCAGTGACATCAATAATCGATGGTTTGAAGAAACTATATATAGAGAAGCTAAAGCCGTTGGAAGTTACTTACCGATTCAACGATTTCTGCTCACCCACTCTGACCAGCAGTGACTTTGATGCCAAGCCAATGGTTATGCTTTTAGGCCAGTATTCTACTGGAAAGACAACATTCATCAAACACTTGCTAAGAGCAAGTTATCCAGGGGCTCACATTGGACCAGAGCCAACTACAGATCGCTTTGTTGTTGTGATGTCAGGGCCTGATGAGAGAAGTGTACCTGGTAACACAGTTGCCGTGCAAGCAGATATGCCTTTTAGCGGGTTAACAAGATTTGGAACTGCTTTCCTCTCTAAATTTGAGTGTTCACAAATGCCACACTATTCCTCTTCTGGAGCATATCACCTTTGTTGATACTCCAGGAGTTCTTTCTGGAGAGAAACAGCGTACACAACGCAGCTATGACTTCACTGGCGTGACTTCATGGTTTGCCACAAAGTGTGATCTTATATTATTGTTATTTGACCCTCACAAGCTTGATATTAGTGATGAATTTAAGCGTGTGATTGGCTCTCTTCGTGGCCATGATGATAAGATACGAGTAGTGCTCAACAAAGCAGATCAGATTGATACGCAACAGTTG_-_ATGAGAGTATATGGGGCATTGATGTGGTCGCTTGGAAAAGTTCTGAATACACCTGAAGTTAATCGGGTATATATTGGTTCATTCAATGATAAACCAATAAATGATGCAGCGATAGGTCCCATTGGAAAAGATTTATTTGAGAGGGAACAAGAAGATCTGCTGTCTGATTTAAAAGATATCCCTAGAAAGGCCTGTGACCGTCGTATAAATGAATTTGTAAAACGTGCTCGAGCAGCTAAGATTCATGCATACATCATCGGTCATCTGAAGAAAGAGATGCCTACCATGATGGGAAAGGCTAAGGTTCAACAGCGCCTCATTGATAAATTAGATGAGGAATTTGGAAAGGTTCAAAGGGAGTACCATTTACCTGCTGGTGACTTTCCAAACGTTGAACATTTCAAGGAAGTATTGAGTGGTTATAACTTCGATAAATTTGAGAAGATTAAACTAAAAATGATTCAGACAGTAGATGACATGCTAGGATATGACATTCCTGACTTACTGCGCAAGTTCCGCAACCCATACGACTGA___ATTGTTTGTAAATTTTTAATCTTGACATTTTATTATTCTCTGCCTGGATTTATTTGCAGAGATACATGTCACATGGATGTCATATCAGTGTGGTGCATATTGTGACCGATGTAATTGTTGCAATTTTTTTACTCTTGC

Fln Alignment:

Contig1323___MWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRKFRNPYD
B8LM82_________________MWSLGKVLNTPEVNRVYIGSFNDKPINDVAIGPIGKDLFEKEQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIDNLDEEFAKVQREYHLPAGDFPSIEHFKEVLSGYNFDKFEKIKLKMIQSVDDMLGYDIPELLRKFRNPYD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
819		25		75	0.996473
820	25	75			0.996473
823		75	25		0.996473
824			25	75	0.996473
935	80			20	0.995493
936	80		20		0.995493
938	80		20		0.995493
1028	85		14		0.993533
1090			14	85	0.993533
1100	12			87	0.992554
1103	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain