SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1318

Length: 536 nt

UniGene Fasta

>biog2_v2.0_unigene1318
CAAAGACAGTGATCAGAAGATTGGATCAAGTTGTCCAGAGATACCGCCACCTTGTGATATTTACTCAATGACTCTTCTCGGAAAAACTATCCCAACACAAAGGATCACACTTTTAGTGCAGTCATGCCTTCACTGCCGGAGACATTAAGGTGGCTTAGGGAATGTGTTCAACAAAACCATTCTTTGCGCATACAGGTGCTTGTCACTGGTTCTTTACATCTTATTGGAGATGTGTTGAGGATGCTTAAGAAGTGTCCATGAATCCACTCTTATAGAACATGGAGCTTAGTTAAGATATCGACCAACTTCAAATGAACATTGGTTAATCATTCCCAGGTTTCACTGAGTGGTGTCTTCTGCATTGAAAGGTACTCTGTGTTCCCTATTGTCTGAGCAACTTTGAAAAGTTTCAATTATAAATTGCTCAACAGAACAAGCTAACAGATTTGTGCATGGAATTATGTTGAGGCATATAAAATATGTCATAATTTATAGCTTCAGTATAGCATGTGAGCTCATTGAAATATTTTATGTAG

Ace file of the UniGene biog2_v2.0_unigene1318

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25589	1/2
SustainPine v2.0	sp_v2.0_unigene28405	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative folylpolyglutamate synthetase [Arabidopsis thaliana]	-	-	3.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	folylpolyglutamate synthase	-	-	3.68139e-15	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tetrahydrofolate synthase.	EC:6.3.2.17	-	3.68139e-15	79%

Source	KEGGs	Term	e value	Identity
Blast2go	Folate biosynthesis	00790	3.68139e-15	79%
Blast2go	Biosynthesis of phenylpropanoids	01061	3.68139e-15	79%
Blast2go	Metabolic pathways	01100	3.68139e-15	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	tetrahydrofolylpolyglutamate synthase activity	GO:0004326	Molecular Function	3.68139e-15	79%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	3.68139e-15	79%

Source	InterPros	Term	Type	Identity
Sma3	Folylpolyglutamate synthetase	IPR001645	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Mur ligase, central	IPR013221	-	-
Sma3	Folylpolyglutamate synthetase, conserved site	IPR018109	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HLM9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 434 aas, your sequence is shorter than subject: 87 - 1717

Fln protein: QRQ*SEDWIKLSRDTATL*YLLNDSSRKNYPNTKDHTFSAVMPSLPETLRWLRECVQQNHSLRIQVLVTGSLHLIGDVLRMLKKCP*

Protein Length: 88

Fln nts: CAAAGACAGTGATCAGAAGATTGGATCAAGTTGTCCAGAGATACCGCCACCTTGTGATATTTACTCAATGACTCTTCTCGGAAAAACTATCCCAACACAAAGGATCACACTTTTAGTGCAGTCATGCCTTCACTGCCGGAGACATTAAGGTGGCTTAGGGAATGTGTTCAACAAAACCATTCTTTGCGCATACAGGTGCTTGTCACTGGTTCTTTACATCTTATTGGAGATGTGTTGAGGATGCTTAAGAAGTGTCCATGAATCCACTCTTATAGAACATGGAGCTTAGTTAAGATATCGACCAACTTCAAATGAACATTGGTTAATCATTCCCAGGTTTCACTGAGTGGTGTCTTCTGCATTGAAAGGTACTCTGTGTTCCCTATTGTCTGAGCAACTTTGAAAAGTTTCAATTATAAATTGCTCAACAGAACAAGCTAACAGATTTGTGCATGGAATTATGTTGAGGCATATAAAATATGTCATAATTTATAGCTTCAGTATAGCATGTGAGCTCATTGAAATATTTTATGTAG

Fln Alignment:

Contig1318___LNDSSRKNYPNTKDHTFSAVMPSLPETLRWLRECVQQNHSLRIQVLVTGSLHLIGDVLRMLK
F6HLM9_________________LYENGSSGSPSSKCLSSSAVMPSLPLTIRWLRDCVKENPSLRLQVLVTGSLHLVGDVLKLLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain