SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1260

Length: 1034 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1260

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16210	1/19
SustainPine v2.0	sp_v2.0_unigene26740	1/19
SustainPine v2.0	sp_v2.0_unigene60372	15/19
SustainPine v2.0	sp_v2.0_unigene78730	2/19

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	mitochondrial dicarboxylate carrier	-	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Overlapping hits, possible frame ERROR between 372 and 365,

Fln protein: CSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKITAGLIAGGIGAAVxxxxADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVRKIFKDFDF*

Protein Length: 301

Fln nts: TGTAGCACGCACCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAACAAACTGTTCGCCCCGCATTCGCCTTTGCTAATGTGGGCGCCGGTTACCCGGTGACGGAATTAGCCCACCAGAATAGGGTGGGACCAATCTCTGTGGGAATCCGCGTGGTTCAGACGGAGGGAGTGTCTGCGCTCTTTTCCGGTGTGTCTGCAACCATGCTCCGGCAGGTACTGTACTCGACCACTCGCATGGGTTTATACGAGATTCTGAAGGAGAAATGGCGAGAGCCGGGTTCGAAACCGGGAAACCTACCACTTGTCCAGAAGATCACCGCCGGTTTGATCGCTGGAGGCATCGGCGCCGCTGTGxxxxxxxxxxxxGCAGATGTGGCGATGGTGAGAATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGCCGACGCCATCGGTCGCATGGTTCGACAGGAGGGTGTCACTTCGCTATGGACAGGGTCATCCTTAACGGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATCCCGTGGACGTTATCAAGACCCGGATCATGAATATGAACCCTAAACCAGGAGAGCCTGCACCTTATTCCGGAGCCCTGGATTGTGCCATGAAGACCATAAAGGCGGAAGGCCCTATGGCTCTTTACAAGGGATTTATTCCCACTGTGACGAGACAAGGTCCTTTTACTATCGTTCTTTTCGTCACTCTGGAGCAAGTTAGGAAGATTTTTAAAGATTTCGATTTTTAGATTCTATTTTATATCATAGGTAACTCTGCTACCTATTCAGTATTAGGGGTTCTGTATGCCTGTAGTTTTGGTCCCTGCTTGCAGATCTTGATGATGATGATGAAAAATATTGATTAAATAAATATATTATTAGTTT

Fln Alignment:

Contig1260___CSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKITXXXXXXXXXXXVxxxADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVR
C0PSC7_________________CSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQ-KVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVxxxADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVR

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
372	25	75			0.996473
375		75	25		0.996473
376	75			25	0.996473
394	25		75		0.996473
409	25		75		0.996473
472	11			88	0.923564
473		88		11	0.923564
475	88		11		0.923564
476		88	11		0.923564
496	88		11		0.923564
589	81	18			1.0
595		18		81	1.0
604	12		81		0.999943
610		13		86	0.999973
613	80		20		1.0
619	13		86		0.999973
631		20		80	1.0
652	13		86		0.999973
680	14		85		0.999981
682		21		78	1.0
708	85			14	0.999981
710		84	15		0.999986
712	16			83	0.999991
722		25	75		1.0
727			25	75	1.0
739		81		18	0.999994
748			81	18	0.999994
751		18		81	0.999994
769	90	10			0.90298
772	10		90		0.90298
781		77		22	0.999999
802	87		12		0.992554
814			12	87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
987	1001	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain