SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1238

Length: 1386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1238 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9909	57/57

Source	Descriptions	Term	Type	Identity
AutoFact	EST978588 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTAAP38, mRNA sequence.	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	14-3-3-like protein	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein domain specific binding	GO:0019904	Molecular Function	0.0	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	14-3-3 protein	IPR000308	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU69

Fln msg:

Fln protein: MSAEKERESHVFMAKLAEQAERYDEMVQSMKDVAKLDLELSVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNEQNAKRIRDYRQKVEDELCRICNDILSIIDDHLLPSSTSGESTVFYYKMKGDYYRYLAEFKSGNERKEIADQSLKAYEAASNTAATDLPPTHPIRLGLALNFSVFYYEIQNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWSSDLEDLGGDDQPKGEETKVEDGEP*

Protein Length: 261

Fln nts: TAGTGACCGGGCTCACGAGTATTTTGGCAAATTTGATGGATCCATTTTTGGTTGGTGCTTCGTTTATGTTTTCCTTGTGAGTGCTAGCTGCAGTAGCTGTGAGTTTCGATCTCAGTTCGATTAATTTAGCCAAAGAAA_-_ATGAGTGCCGAGAAAGAGAGGGAGAGCCATGTTTTCATGGCCAAGTTAGCCGAGCAGGCCGAGCGTTACGATGAAATGGTGCAGTCAATGAAGGATGTTGCCAAATTGGATCTAGAGCTGTCTGTAGAGGAAAGAAACTTGCTTTCTGTTGGATATAAGAATGTTATTGGTGCCAGGAGAGCATCATGGCGGATTATGTCCTCCATTGAGCAGAAAGAAGAAGCAAAGGGAAATGAGCAGAATGCGAAAAGGATCAGGGATTACCGACAAAAGGTGGAGGATGAACTCTGTAGAATCTGCAATGACATTCTGTCAATTATTGATGATCATCTCCTCCCTTCTTCTACCTCAGGGGAGTCCACAGTATTTTACTATAAGATGAAAGGCGATTACTACCGATATCTTGCTGAATTTAAATCTGGAAATGAAAGGAAGGAGATTGCTGATCAATCTTTGAAGGCTTACGAGGCTGCTTCAAATACTGCAGCTACAGATCTGCCTCCCACACATCCAATCAGGCTTGGCTTAGCACTAAACTTTTCAGTTTTCTATTATGAAATTCAGAACTCTCCTGAAAGAGCATGTCACTTGGCAAAACAAGCATTTGATGAAGCCATTGCAGAGCTTGATACTCTCAGTGAAGAATCATACAAGGACAGCACATTAATAATGCAATTGCTGAGAGACAATCTTACATTATGGAGTTCTGATTTGGAAGATCTTGGAGGGGATGATCAGCCTAAAGGAGAAGAGACGAAGGTGGAAGATGGGGAACCCTAA___TTTTGTTGCAATAGCGATTCTTCGGCAATTTGATTGCTTTGAGGATTTTTGATATTCTTCCTGGCGTACTTCCTCAGTCTTTTTGTTTTGAGTGGATGTATATATCACTTTGATGCAATACAGTTTCACTTGCATTGTGAGTGTTTTTTCTAGATTGACATCCTTCGTTGGTCCTTCAAAGTACGTGGGCTAAAATAAAGCATTAATATGTATGGTAACTGGTACTTCATTTATGTTGGCTTTCCCTGCAAGATTTTCAAATCCTTCGAGTGTCTCTATAGCATAGATCCTTGAGGAAAGCTGCACCATTTTCTAGTGATAGCTATGAAGATCTTCGGGACATTTTTTTAGTTCAGTTTTGTTCCTGGTTATTTGATTAAGAATTGAATCTGCTTTACCAGAACCAAAGCTATGGTGAGCATAATTAGAAAATTTAAAGTTTGTTAATTGGCCAGTAAACGTCATGAG

Fln Alignment:

Contig1238___MSAEKERESHVFMAKLAEQAERYDEMVQSMKDVAKLDLELSVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNEQNAKRIRDYRQKVEDELCRICNDILSIIDDHLLPSSTSGESTVFYYKMKGDYYRYLAEFKSGNERKEIADQSLKAYEAASNTAATDLPPTHPIRLGLALNFSVFYYEIQNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWSSDLEDLGGDDQPKGEETKVEDGEP
A9NU69_________________MSTERERESHVFMAKLAEQAERYDEMVQSMKNVAKLDLELSVEERNLLSVGYKNVIGSRRASWRIMSSIEQKEEAKGNEQNVKRIRDYRQKVEDELYRICNDILSIIDDHLLPSSTSGESTVFYYKMKGDYYRYLAEFKSGNERKEIADQSLKAYEAASNTAATDLAPTHPIRLGLALNFSVFYYKIQNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEDGGEDQPKGEEAKLEDREP

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
318	87		12		0.992554
320	87		12		0.992554
325	75			12	0.975346
367		12		87	0.992554
618		16		83	0.994512
655		10		90	0.90298
679	90		10		0.90298
686		10		90	0.90298
687		10	90		0.90298
688	90	10			0.90298
968		11		88	0.923564
1174		10		90	0.999898
1323	90	10			0.90298
1334	77	22			0.999999
1335	77	22			0.999999
1337		50	50		1.0
1338	71	28			1.0
1339	42	28		28	1.0
1340	60	20			0.99255
1341	80	20			0.995493
1342	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain