SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1230

Length: 289 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1230
AGGGCCATTCAACATGCACCAAGTGTACAGATGCAAGAAGTGCCTCCTGATTTTTATATTCCTGATATTGATGAAGATGAACTTAATCCGGATGAACGTATGGACCAGCATACTCAAGACAGACAGATCCAGCGAGATGATGAATATTATGATGGAGACAATGACATTGATCATGACATGGAAGAGGCAAGCTGATAGCCGAGAAAGATATTTGCCCCTTTGATGCAATATTAATGATAACGCTTTGTTGGATGTCTTTCTTTTACAATGACAATAAATTAGTTTGTAA

Ace file of the UniGene biog2_v2.0_unigene1230 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1009	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI	-	-	89%
FL-Next	sp=Putative histone deacetylase 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	histone deacetylase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone deacetylase.	EC:3.5.1.98	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	93%
Blast2go	histone deacetylation	GO:0016575	Biological Process	93%
Blast2go	histone deacetylase activity (H4-K16 specific)	GO:0034739	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H3-K14 specific)	GO:0032041	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H4-K16 specific)	GO:0046970	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H3-K9 specific)	GO:0046969	Molecular Function	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M1N8

Fln msg: your sequence is shorter than subject: 65 - 142

Fln protein: RAIQHAPSVQMQEVPPDFYIPDIDEDELNPDERMDQHTQDRQIQRDDEYYDGDNDIDHDMEEAS*

Protein Length: 66

Fln nts: AGGGCCATTCAACATGCACCAAGTGTACAGATGCAAGAAGTGCCTCCTGATTTTTATATTCCTGATATTGATGAAGATGAACTTAATCCGGATGAACGTATGGACCAGCATACTCAAGACAGACAGATCCAGCGAGATGATGAATATTATGATGGAGACAATGACATTGATCATGACATGGAAGAGGCAAGCTGA___TAGCCGAGAAAGATATTTGCCCCTTTGATGCAATATTAATGATAACGCTTTGTTGGATGTCTTTCTTTTACAATGACAATAAATTAGTTTGTAA

Fln Alignment:

Contig1230___RAIQHAPSVQMQEVPPDFYIPDIDEDELNPDERMDQHTQDRQIQR
Q9M1N8_________________RYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain