SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1169

Length: 379 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1169
ATGCACTTACAGAAGAACTGACAAATGAAGGAACACATTCTGCTAACTATCCAGTAAGGAACGTCCGCAAAATATGGCTATCCAGTCATGCTCCTATTGTTCTGCCAGGTCGTGGAACACTTCATTTCAAATGTTTTGAGACTTGGAGAATGGAGGAATTTTTGAGACTCACAAGGGAACACTCTCTTGTTTGTCAGGATAGAGCCATTGGAGCAACTGGTGGCGGAGCTTGCAAATTTCTTGCCCGGTTTTCTGAAATTGCTGGCTTGCGGCTGGAGCACAATGATGAATTGAAGAGCTTGGTGCGAGGGATTGATTTTTGGTCAAGATTGCTCAACATGAAAGCTTTGAGTATCCTATAGGTTCATACAGAGCAGGA

Ace file of the UniGene biog2_v2.0_unigene1169 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21877	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pantothenate kinase 2 (Hallervorden-Spatz syndrome) [Rattus norvegicus] gb\|EDL80236.1\| pantothenate kinase 2 (Hallervorden-Spatz syndrome) (predicted), isoform CRA_a [Rattus norvegicus]	-	-	5.04467e-44	52%
FL-Next	tr=Pantothenate kinase putative; Albugo laibachii Nc14.	-	-	0.0	34%
Blast2go	pantothenate kinase 1	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pantothenate kinase.	EC:2.7.1.33	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	pantothenate kinase activity	GO:0004594	Molecular Function	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%
Blast2go	nucleolus	GO:0005730	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF89	IPR002791	-	-
Sma3	Type II pantothenate kinase	IPR004567	-	-
Sma3	Pantothenate kinase, bacterial	IPR011602	-	-
Sma3	Pantothenate kinase, acetyl-CoA regulated, two-domain type	IPR015844	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F0WP99

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 230 aas, your sequence is shorter than subject: 120 - 448

Fln protein: ALTEELTNEGTHSANYPVRNVRKIWLSSHAPIVLPGRGTLHFKCFETWRMEEFLRLTREHSLVCQDRAIGATGGGACKFLARFSEIAGLRLEHNDELKSLVRGIDFWSRLLNMKALSIL*

Protein Length: 121

Fln nts: ATGCACTTACAGAAGAACTGACAAATGAAGGAACACATTCTGCTAACTATCCAGTAAGGAACGTCCGCAAAATATGGCTATCCAGTCATGCTCCTATTGTTCTGCCAGGTCGTGGAACACTTCATTTCAAATGTTTTGAGACTTGGAGAATGGAGGAATTTTTGAGACTCACAAGGGAACACTCTCTTGTTTGTCAGGATAGAGCCATTGGAGCAACTGGTGGCGGAGCTTGCAAATTTCTTGCCCGGTTTTCTGAAATTGCTGGCTTGCGGCTGGAGCACAATGATGAATTGAAGAGCTTGGTGCGAGGGATTGATTTTTGGTCAAGATTGCTCAACATGAAAGCTTTGAGTATCCTATAGGTTCATACAGAGCAGGA

Fln Alignment:

Contig1169___ELTNEGTHSANYPVRNVRKIWLSSHAPIVLPGRGTLHFKCFETWRMEEFLRLTREHSLVCQDRAIGATGGGACKFLARFSEIAGLRLEHNDELKSLVRGID
F0WP99_________________KFVNENEHFGQSGVRDVR---LHMH---LKEFEGTFHFIRFESSHTAEAINLISEHGLNQSLRILPCTGGGAYKYAQLFSDMAAIELKKYDEIECILRGLN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
332		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain