SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1097

Length: 538 nt

UniGene Fasta

>biog2_v2.0_unigene1097
TCGAGAGGATGAGAACTATTTTGGGGGAAAACTACTATATATGCCGATTCCAGGAGCCTGGAAGAGCTGAAGAAGAATTCAGCCGTTTTGATTGTGAAACTATTATGAAAAAGTTTCTATTGGCAACTGGGACAGGCCTGTTCTCTGCATCTCCAGAAGGAGGAATTTTAGATGTTTTGAAGACTCCAACAGTTCTTCCTTCTTGGATGACAGAGGAAGAAATCCAATACTTTGCCAAGCAATTTGAGAAAACAGGTTTTACTGGAGGTCTTAACTATTATCGAGCACTTGATTTAAATTGGGAGCTCCTGGCCCCTTGGACAGGAGCCAGAATTACAGTCCCAACAAAATTTGTAGTTGGAGAGAAAGACTTGGTATACAATACACCTGGTATGAAGAACTTTATTCATGGAGGAGGCTTGAAGAAATTTGTCCCCTCTCTAGAGGAAGTGGTTGTTATTGAAGATGGTCATCACTTCATCCAGCAAGAGAAAGCAAATGAAATTTCTGATCATATTCTCAAATTCTTTGGAAGAAT

Ace file of the UniGene biog2_v2.0_unigene1097

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26831	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Epoxide hydrolase, putative n=1 Tax=Ricinus communis RepID=B9S689_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	epoxide hydrolase 2	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY4

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 178 - 319

Fln protein: ERMRTILGENYYICRFQEPGRAEEEFSRFDCETIMKKFLLATGTGLFSASPEGGILDVLKTPTVLPSWMTEEEIQYFAKQFEKTGFTGGLNYYRALDLNWELLAPWTGARITVPTKFVVGEKDLVYNTPGMKNFIHGGGLKKFVPSLEEVVVIEDGHHFIQQEKANEISDHILKFFGR

Protein Length: 179

Fln nts: TCGAGAGGATGAGAACTATTTTGGGGGAAAACTACTATATATGCCGATTCCAGGAGCCTGGAAGAGCTGAAGAAGAATTCAGCCGTTTTGATTGTGAAACTATTATGAAAAAGTTTCTATTGGCAACTGGGACAGGCCTGTTCTCTGCATCTCCAGAAGGAGGAATTTTAGATGTTTTGAAGACTCCAACAGTTCTTCCTTCTTGGATGACAGAGGAAGAAATCCAATACTTTGCCAAGCAATTTGAGAAAACAGGTTTTACTGGAGGTCTTAACTATTATCGAGCACTTGATTTAAATTGGGAGCTCCTGGCCCCTTGGACAGGAGCCAGAATTACAGTCCCAACAAAATTTGTAGTTGGAGAGAAAGACTTGGTATACAATACACCTGGTATGAAGAACTTTATTCATGGAGGAGGCTTGAAGAAATTTGTCCCCTCTCTAGAGGAAGTGGTTGTTATTGAAGATGGTCATCACTTCATCCAGCAAGAGAAAGCAAATGAAATTTCTGATCATATTCTCAAATTCTTTGGAAGAAT

Fln Alignment:

Contig1097___ERMRTILGENYYICRFQEPGRAEEEFSRFDCETIMKKFLLATGTGLFSASPEGGILDVLKTPTVLPSWMTEEEIQYFAKQFEKTGFTGGLNYYRALDLNWELLAPWTGARITVPTKFVVGEKDLVYNTPGMKNFIHGGGLKKFVPSLEEVVVIEDGHHFIQQEKANEISDHILKFFGR
B8LKY4_________________EKLRTFLGENYYICRFQEPGRAEEEFARYDCETIVKKFLLATGTGLFSASPDKGIIDVLKTPTILPSWMTEEEIQYFAKQFEKTGFTGGLNYYRALDLNWELLAPWTGASITVPTKFVVGEKDLVYTTPGMKNFIHGGGLKKIAPFLEEVVVIEDAHHFITQEKPNEISDHILKFFGR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain