SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1082

Length: 1313 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1082

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9512	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RM68_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein phosphatase 2c	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	75%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: Separated hits, possible frame ERROR between 51 and 113, and overlapping frame ERROR between 823 and 804, and overlapping frame ERROR between 1130 and 1109, Distance to subject end: 88 aas, your sequence is shorter than subject: 437 - 526

Fln protein: MGSCLSSDGRSLSTxxxxxxxxxxxxxxxxxxxxxxMSNMPNSAAEEKAYEQIGRIPGRMFANGASNVACMFTQQGRKGTNQDAMLVWEDFGSRRDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSSQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESTDMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPSIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQxxxxxxxxxHDEPEVSRVWLPHNDSPGLAMARAFGDFCLKDFGLISVPDVSYHRLTERDEFIVLATDGVWDVLSNKEVVEIVASAPSQTTAARALVEYAVRxxxxxxxxxxVDDCAAVCLFLNNSLPSEPKSKTAVAQSLSSQAVPQQITSVSATDSRKDLDKNTEDFSETN

Protein Length: 438

Fln nts: CTTAGA_-_ATGGGGTCCTGTTTATCATCTGATGGGAGGAGTCTGAGTACTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATGTCTAACATGCCGAATTCGGCTGCTGAAGAGAAAGCATATGAGCAGATCGGTAGGATTCCTGGCAGGATGTTTGCCAATGGTGCCAGCAATGTTGCTTGCATGTTTACGCAGCAAGGCCGAAAGGGAACCAATCAGGATGCCATGCTTGTCTGGGAGGACTTCGGTTCTAGAAGGGACACGGTTTTCTGTGGAGTATTTGATGGGCATGGCCCTTTTGGCCATCTAGTTGCCAAGAAGGTGAGGGATTCACTGCCATCAAAGCTGAGCAGTCAATGGGAAGCAGAGATGAAGGATGATGACAGCATCAAAGAGGCTAATAGCACTGTGGGAAGCATGAATTCTGAGGAATCACTATCAGTTACCATGGACGATGAATGGAGGGAGTCAACAGATATGGAAGAGAGGGAGAAGTGCCCAGAAATATTTTTGACATTGAAAGAGTCATTTCTGAAAGCCTTCAAAGTGATGGATAAGGAGTTGAGGCTGCATCCTTCAATAGATTGCTTTTGTAGTGGAACTACTGCAGTAACGTTGGTGAAGCAGGGACAAGACTTGGTAATCGGAAATGTTGGAGACTCAAGAGCAGTTCTGGGTACGAGAGTTCAAGACAATTCATTGTCTGCAGTGCAGTTGACTGTGGATTTGAAACCCAATCTCCCAAGGGAAGCTGAGAGGATTCGACAATxxxxxxxxxxxxxxxxxxxxxxxxTGCATGATGAGCCTGAGGTATCACGTGTTTGGTTGCCTCATAATGATTCCCCTGGGCTGGCTATGGCTAGAGCTTTTGGTGATTTCTGTCTGAAGGACTTTGGCCTGATCTCTGTGCCTGATGTCTCTTACCATCGTTTAACTGAAAGAGATGAATTCATTGTACTGGCTACGGATGGGGTCTGGGATGTATTGTCTAATAAGGAGGTTGTGGAAATTGTGGCATCAGCACCTTCTCAAACAACTGCAGCCAGAGCTTTGGTGGAGTATGCTGTTCGAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTGGATGATTGTGCAGCGGTCTGTCTTTTCCTCAATAATTCTCTACCATCTGAGCCAAAATCAAAAACTGCAGTGGCACAGAGCCTTAGTAGTCAAGCAGTGCCACAACAGATCACTTCAGTGTCAGCTACAGATTCACGTAAAGATTTGGACAAGAACACAGAAGACTTCAGTGAGACAAATA

Fln Alignment:

Contig1082___MGSCLSSDGRSLSTLxxxxxxxxxxxxxxxxxxxxxMSNMPNSAAEEKAYEQIGRIPGRMFANGASNVACMFTQQGRKGTNQDAMLVWEDFGSRRDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSSQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESTDMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPSIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCxxxxxxxHDEPEVSRVWLPHNDSPGLAMARAFGDFCLKDFGLISVPDVSYHRLTERDEFIVLATDGVWDVLSNKEVVEIVASAPSQTTAARALVEYAVRAWRxxxxxxxVDDCAAVCLFLNNSLPSEPKSKTAVAQSLSSQAVPQQITSVSATDSRKDLDKNTEDF---SETN
B8LLH8_________________MGSCLSTDGRSLSTLxxxxxxxxxxxxxxxxxxxxxMSNMPNSAAEAKADEQISRIPGRMFGNGASNVACMFTQQGRKGTNQDAMLVWEDFGSRKDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSNQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESADMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPTIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCxxxxxxxHDEPEVSRVWLPHNDSPGLAMARAFGDFCLKDFGLIAVPDVSYRRLTERDEFIVLASDGVWDVLSNKEVVDIVASAPSQTTAARALVEYAVRAWRxxxxxxxVDDCAVVCLFLNNSLPSEPKSKTALAQGPSTQAVPKEITSVSATDSREDSENKTEDFLIDSETN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
133		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
84	98	GAG GAG GAG GAG GAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain