SustainPineDB

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Assembly info
Unigenes
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1039

Length: 533 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1039
GTGGTATCCTTACTATTGGACATGTGGTACAGAATGGCTTGAATACGACCCCAATAGTCCCTAATCAGCCTCATTACAATGTCAATTTGACAAAAATAGAGATTGATGGTGCAGCATTGAATGTTGACCAGAGGGTGTTCGAAACTGGTGAGAAGGAAGGCACAATTATAGATAGTGGTACAACCCTTGCTTACATATCAACGCCAGCTTATAAACCTTTGTTAGCTGCGATCATGCAAGCAGAGCCAGGTTTGCAATATTCATTACAACAAGGGGGGACAGTTTGCTTTGTGTATGATGGAAGTGTGGATAAAGCATTTCCAGTTGTAACTTTCTACTTTGAAGGGTCACTTAGCATGAAAGTCTACCCTCATGACTATCTTCTATTATCTGATAATCTTTGGTGTATTGGGTGGCAAGACAGTGGAGCACAAACAGCAGACAACAAGTATGTGACTATATTAGGAGATTTGGTGCTAAAGAATAAGCTGGTTGTTTATGATCTCGAGAATCAAACAAATTGGATGGGCTGA

Ace file of the UniGene biog2_v2.0_unigene1039 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22582	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase Asp1, putative n=1 Tax=Ricinus communis RepID=B9RM62_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	aspartic proteinase-like protein 2-like	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR017909	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 54 aas, your sequence is shorter than subject: 177 - 454

Fln protein: GILTIGHVVQNGLNTTPIVPNQPHYNVNLTKIEIDGAALNVDQRVFETGEKEGTIIDSGTTLAYISTPAYKPLLAAIMQAEPGLQYSLQQGGTVCFVYDGSVDKAFPVVTFYFEGSLSMKVYPHDYLLLSDNLWCIGWQDSGAQTADNKYVTILGDLVLKNKLVVYDLENQTNWMG*

Protein Length: 178

Fln nts: GTGGTATCCTTACTATTGGACATGTGGTACAGAATGGCTTGAATACGACCCCAATAGTCCCTAATCAGCCTCATTACAATGTCAATTTGACAAAAATAGAGATTGATGGTGCAGCATTGAATGTTGACCAGAGGGTGTTCGAAACTGGTGAGAAGGAAGGCACAATTATAGATAGTGGTACAACCCTTGCTTACATATCAACGCCAGCTTATAAACCTTTGTTAGCTGCGATCATGCAAGCAGAGCCAGGTTTGCAATATTCATTACAACAAGGGGGGACAGTTTGCTTTGTGTATGATGGAAGTGTGGATAAAGCATTTCCAGTTGTAACTTTCTACTTTGAAGGGTCACTTAGCATGAAAGTCTACCCTCATGACTATCTTCTATTATCTGATAATCTTTGGTGTATTGGGTGGCAAGACAGTGGAGCACAAACAGCAGACAACAAGTATGTGACTATATTAGGAGATTTGGTGCTAAAGAATAAGCTGGTTGTTTATGATCTCGAGAATCAAACAAATTGGATGGGCTGA

Fln Alignment:

Contig1039___GILTIGHVVQNGLNTTPIVPNQPHYNVNLTKIEIDGAALNVDQRVFETGEKEGTIIDSGTTLAYISTPAYKPLLAAIMQAEPGLQYSLQQGGTVCFVYDGSVDKAFPVVTFYFEGSLSMKVYPHDYLLL-----SDNLWCIGWQDSGAQTADNKYVTILGDLVLKNKLVVYDLENQ
B8LMX2_________________GILVLGEITEPGMVYTPIVPSQPHYNLNLQGIAVNGQQLSIDPQVFATTNTRGTIIDCGTTLAYLAEEAYEPFVNTIIAAVSQSTQPFMLKGNPCFLTVHSIDEIFPSVTLYFEGA-PMDLKPKDYLIQQLSPDSSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKVFVYDLENQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain