SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1033

Length: 1203 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1033

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10099	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RGI4_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	serine-threonine protein plant-	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	61%
Blast2go	catalytic activity	GO:0003824	Molecular Function	61%
Blast2go	cell wall	GO:0005618	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Overlapping hits, possible frame ERROR between 793 and 778, and overlapping frame ERROR between 1146 and 1143, STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 401 - 610

Fln protein: RLSGTIPPSIKNLGSLLFLDLNDNLLSGPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPSSLGRLSSLSSLSLNDNFLQGTIPEALSNISKLWYLNLSRNLFSDPLPSSLANASALLSLDLSYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTATSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYDISGACSxxxxxxxFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLxxxxAAAFAQNDCLCGSPLPVC

Protein Length: 402

Fln nts: TCGCTTGTCAGGCACCATTCCGCCGTCGATAAAGAATCTCGGCAGCTTGCTGTTCTTGGATTTGAATGATAATCTTCTTTCCGGTCCCGTTCCGGCATTCTTAGGCTCGTTCAGAAATATAACATTTCTTGACCTGTCAACCAATGCTTTAACGGGCGCCATACCGGCGGCACTGGGAAATCTTTCCAGCGTCTTAGAGCTTTCCCTGGCAAGGAACCAGCTAACTGGCCCAGTTCCTTCATCGCTTGGACGTTTAAGTTCCCTCAGCAGTTTATCACTGAACGACAATTTCCTCCAAGGTACGATTCCCGAAGCTCTCTCTAACATCTCAAAGCTTTGGTACCTGAATCTTTCAAGAAACCTGTTCTCTGATCCCCTCCCGTCTTCTCTGGCAAATGCCTCGGCTCTCCTGAGCCTCGACCTTTCCTATAACAAGCTGAATCTTGGGCGCATTCCCGAATGGATTACGCGCAAAGAAATGTCCGACGTGCATTTGGCGGGCTGCGGTATCAGCGGGCGTCTGAGCGACTGGAAACCTACGGCGACCTCCATGTATTCTTCTATCGATTTCTCTGATAATAACCTAACCGGAGAAATAGGGGATATTTTCAAGAACATGTCTCAGCTAGAAAAAATCTTTCTGTCCAACAACTATCTGAAATCGAATCTCTCAGAGGCTTCGTTTCCGGAATTGATCGGCACGGTTGATCTGCACTCAAATCAGCTTTACGGATCCATTAAAAACATCTTGTACGATATCTCTGGTGCCTGTTCTxxxxxxxxxxxxxxxxxxxxxTTCTTGGATTTGTCCAACAATTTGATCTCCGGCAGCATACCAGAACTTGACGGAGAAAGAAGGGTGAAATGGATGGATCTGTCCAATAATATGCTCACCGGGAGCATTCCGGCTTCCATCTCGATGCTTACCTCTGTGAAGCATCTGGACATATCCAAAAATCATTTAGACGGCAAGTTGCCCCAGAGCTTAGGCCAGTTATCTGAACTGACATGGTTGGATTTGTCAAGAAATGGTTTCAGTGGAGGGCTCCCTGCAGAGATGTTGGGTTTGAAAAAATTGCAGCATGTAAATTTCAGATATAATCATTTGTGTGGTGAAATTCCTCAAGGGAAACCACTGAAxxxxxxxxxTGCTGCTGCATTTGCTCAGAACGACTGTCTCTGCGGATCGCCTCTTCCTGTGTGCA

Fln Alignment:

Contig1033___RLSGTIPPSIKNXXXXXXXXXXXXXXXXPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPXXXXXXXXXXXXXXNDNFLQGTIPEALSNISKLWYLNLSRNLFXXXXXXXXXXXXXXXXXXXXYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTA-TSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYD-ISGACSSxxxxxDFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLNIxPAAAFAQNDCLCGSPLPVC
B8LS28_________________RLTGVLPTTLKNIRGLQSLDINGNILSGPIPAFLGSFVNLTYLDLSGNEFTGPIPASIADLSSIQDLSLSRNRLTGEIPYSLGRMNSLSSLSLSENMLVGVIPESISKMSNLWNLNLSKNHLSDPLPSGLAKASALVRLDLSYNNLHLGRIPDWITKKEMTNLHLAGCGVRQCLSTWKPRAMNSLLSSIDLSNNNLTGDISQLLKNMTSLQRVYLSNNSLTTNLSEVSLPDSISVLDLHSNKLYGSIEKLFYDNISESCPSxxxxxEFINLANNEITGRIPEIDGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRMVGKIPGAMGELKELRWLDLSWNGLKGRIPGQILGLKHLKHMNLRNNRLCGEIPQGKPLNVxPASAYAHNDCLCGSPLPRC

SNPs (tot: 3)

Position	C %	G %	T %	Probability
423	20		80	0.995493
976	14	85		0.993533
977	14	14		0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain