SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1008

Length: 487 nt

UniGene Fasta

>biog2_v2.0_unigene1008
ATGGGGTTTGGCATGGAAGGCCAACTAGAAGACCCTACTTCAAGTTGGCAGCTTGTCTTCGTGGACCATGAGAATGATATTCTTCTTGTTGGAGATGATCCCTGGGAGGAGTTTGTAAGCTGCGTCCGTTATATTAAGATCTTATCACCTCAAGAGGTTTTACAAATGAGTCAGGAAGGGATTGAGATCATAAACAACACACCAATACAGCTGCAAAACAGTAGCTATTCAGATGATCATAATGCTTGGAGAGATCATTGTTACCACAGCTCTGCCAATCCTTCATCGGTATCTTTCAATCATTAGTTTTTCTGGGATGGTCCCTTACTTTGACTATTGACCAGCGCAAGTTTTATTCTGAGTTGATTGGATGATGCGGAGGTGAAATGTTTTCAGAATCACTGCCCATTGTTTACACTCTCATCTCTGAGTGGAGGCCTCCATGTATAATGAAGCCATATCTACCACCAATGATCTCAGTTCCTGC

Ace file of the UniGene biog2_v2.0_unigene1008

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11377	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 5/7 (Fragment) n=1 Tax=Gnetum gnemon RepID=E1UHX8_GNEGN	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	auxin response	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	58%
Blast2go	cellular process	GO:0009987	Biological Process	58%
Blast2go	protein binding	GO:0005515	Molecular Function	58%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: your sequence is shorter than subject: 102 - 450

Fln protein: MGFGMEGQLEDPTSSWQLVFVDHENDILLVGDDPWEEFVSCVRYIKILSPQEVLQMSQEGIEIINNTPIQLQNSSYSDDHNAWRDHCYHSSANPSSVSFNH*

Protein Length: 103

Fln nts: ATGGGGTTTGGCATGGAAGGCCAACTAGAAGACCCTACTTCAAGTTGGCAGCTTGTCTTCGTGGACCATGAGAATGATATTCTTCTTGTTGGAGATGATCCCTGGGAGGAGTTTGTAAGCTGCGTCCGTTATATTAAGATCTTATCACCTCAAGAGGTTTTACAAATGAGTCAGGAAGGGATTGAGATCATAAACAACACACCAATACAGCTGCAAAACAGTAGCTATTCAGATGATCATAATGCTTGGAGAGATCATTGTTACCACAGCTCTGCCAATCCTTCATCGGTATCTTTCAATCATTAG___TTTTTCTGGGATGGTCCCTTACTTTGACTATTGACCAGCGCAAGTTTTATTCTGAGTTGATTGGATGATGCGGAGGTGAAATGTTTTCAGAATCACTGCCCATTGTTTACACTCTCATCTCTGAGTGGAGGCCTCCATGTATAATGAAGCCATATCTACCACCAATGATCTCAGTTCCTGC

Fln Alignment:

Contig1008___FGMEGQLEDPTSSWQLVFVDHENDILLVGDDPWEEFVSCVRYIKILSPQEVLQMSQE
C0PTP3_________________FNIEGELEDPNKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain