SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene948

Length: 307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene948
CTAATAATAATGGTTTATTGTGATAGAGAATTGGATAGGCTGTGATCAATTTGAAAATCCGGGCTCGTTGTATCCATTCATGTTAGAATGGCTTATTGCTTCACTCTAATCTGTCTGCTCCAGTCAGTAATTGCTGTAGTCTCTGGTTCCCTCATGATGTTCTTCTGGAGAGAAGTTTCTATCTTCGGGCATGGGAAGGAGACTGCCAGCAAACTCCTGGGTTCCACTCCCCACGATCAGCTTTTGATTCAGACATCGGATTCCCTTGACAAGGACAATGCTTCTGTTTTCTATAGGAGTTATGTTG

Ace file of the UniGene biog2_v2.0_unigene948 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2703	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	7TMR-DISM_7TM domain containing protein	-	-	0.0001	13%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transport	GO:0006825	Biological Process	85%
Blast2go	copper chaperone activity	GO:0016531	Molecular Function	85%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM88

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 73 - 143

Fln protein: MAYCFTLICLLQSVIAVVSGSLMMFFWREVSIFGHGKETASKLLGSTPHDQLLIQTSDSLDKDNASVFYRSYV

Protein Length: 74

Fln nts: CTAATAATAATGGTTTATTGTGATAGAGAATTGGATAGGCTGTGATCAATTTGAAAATCCGGGCTCGTTGTATCCATTCATGTTAGA_-_ATGGCTTATTGCTTCACTCTAATCTGTCTGCTCCAGTCAGTAATTGCTGTAGTCTCTGGTTCCCTCATGATGTTCTTCTGGAGAGAAGTTTCTATCTTCGGGCATGGGAAGGAGACTGCCAGCAAACTCCTGGGTTCCACTCCCCACGATCAGCTTTTGATTCAGACATCGGATTCCCTTGACAAGGACAATGCTTCTGTTTTCTATAGGAGTTATGTTG

Fln Alignment:

Contig948___MAYCFTLICLLQSVIAVVSGSLMMFFWREVSIFGHGKETASKLLGSTPHDQLLIQTSDSL
A9NM88________________MAYCFSLVCLLHSVTAVVSGCLMMFFWREVSIFGHGKETASKLLGSTPHDQLLIQTSDSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain