SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene902

Length: 1185 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene902 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9510	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam04146, YTH, YT521-B-like domain	-	-	5.0e-17	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	yth domain family protein	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	YTH domain	IPR007275	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 395 - 667

Fln protein: MGEQENVVENGLYYPPNNYYGFYYPGYEVVGNEWDEHGAYLGMDGLEIPYTGIQAENGPLLYYMPGYGYPQPAYNPYNAYFPGAMLGADGLLAHQPYYPSPMYQQPLTSPAYFQPPVAYGSEVTPAFSWESGLAVADRANGNTYNGSAAGGPRTSHSTAVVSSQVPYSKAIPPARKQNVALDSKGAAQPSEGLQSSHSVPAGQPNIHSIGPQSQSGRPVNKIPSHGSTGQTAALPKGYVPLGKVAGCSNQGKANVLYPNNAADFKPNGHEYLAGDRLKTRAKVNGNGNLDVLNEQNRGPRINKMRSPWLLPDANTGAHGLVENTENCVPEVNRDQFNLADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGIKIRCGISSCAGEVWWKSW

Protein Length: 396

Fln nts: ATGGGGGAGCAAGAAAATGTGGTGGAAAATGGGTTATATTATCCACCAAATAACTACTATGGCTTCTATTACCCAGGTTATGAAGTCGTAGGTAATGAATGGGATGAGCATGGTGCTTATCTTGGAATGGATGGCTTGGAGATTCCTTATACAGGAATCCAAGCTGAAAATGGACCCTTGTTATACTATATGCCAGGTTATGGTTACCCTCAGCCTGCTTATAATCCTTATAATGCATACTTTCCTGGTGCTATGCTTGGGGCTGATGGTCTTCTTGCTCATCAGCCATATTATCCCAGTCCTATGTATCAACAACCCCTCACTTCTCCAGCCTATTTTCAGCCACCTGTAGCATATGGATCGGAAGTTACACCAGCTTTTTCATGGGAGTCGGGACTTGCAGTTGCAGATCGGGCAAATGGAAATACTTACAATGGAAGTGCAGCAGGTGGGCCAAGAACAAGCCATTCCACAGCGGTTGTTTCCTCCCAGGTGCCATATTCGAAGGCTATACCACCAGCAAGGAAACAGAATGTTGCTTTGGATTCAAAAGGGGCAGCTCAGCCATCTGAGGGACTGCAATCATCACATTCAGTTCCTGCAGGTCAACCTAATATTCACTCTATAGGCCCTCAAAGCCAGAGTGGGAGGCCTGTGAATAAGATCCCATCACATGGTTCTACTGGTCAAACTGCAGCTTTACCAAAAGGCTACGTACCGTTAGGAAAAGTTGCAGGTTGTTCAAACCAAGGCAAGGCCAATGTTCTGTATCCTAATAATGCTGCAGATTTCAAACCCAATGGGCATGAATATCTTGCTGGTGACAGATTGAAGACACGAGCAAAGGTCAATGGAAATGGGAATTTGGATGTCCTTAATGAACAGAATAGAGGTCCTCGAATCAACAAGATGAGGAGCCCCTGGTTATTACCTGATGCGAATACTGGGGCTCATGGTCTGGTGGAAAATACTGAAAATTGTGTTCCTGAGGTAAATAGAGACCAATTTAACCTGGCAGATTTTCCCACAAAATATGATAATGCGTTGTTTTTTGTGATAAAATCTTATAGTGAGGATGATGTGCATAAGAGTATTAAATACAATGTTTGGGCAAGCACTCCAAATGGAATAAAGATTAGATGCGGCATATCAAGTTGCGCGGGAGAGGTCTGGTGGAAATCCTGG

Fln Alignment:

Contig902___EQENVVEXXXXXXXXXXXXXXXXXYEVVGNEWDEHGAYLGMDGLEIPYTGIQAENXXXXXXXXXXXXXXXXXXXXXXXXXXAMLGADGLLAHXXXXXXXXXXXPLTSPAYFQPPVAYGSEVTPAFSWESGLAVADRANGNTYNGSAAGGPRTSHSTAVVSSQVPYSKAIPPARKQNVALDSKGAAQPSEGLQSSHSVPAGQP----NIHSIGPQSQSGRPVNKIPSHGSTGQTAALPKGYVPLGKVAGCSNQGKANVLYPNNAADFKPNGHEYLAGDRLKTRAKVNGNGNLDVLNEQNRGPRINKMRSPWLLP-DANTGAHGLVENTENCVPEVNRDQFNLADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGIK
D5A886________________EQETVVENGLYYAPNNYYGFYYPGYEVPGNDWDEHGGFIGMDGVEVPYTGMQAENGSLVYYMPGYGYPQPAYNPYNTYFPGAMLGADGLLAHQPYYPSPIYQQPLTSPAYFPPPVAYGSEVPPAFSWESGLAVADRTNGNTFNGSAAGGPRTSHSTTAVS-QVPYSKVAPPARKQNAALDSKGSAQPSEGLQSSHPVPAGQPMPHGNVHSTVPPTQSARPVSKIPPHGSTVQAAALPKGYVPLGKVAGCSTQGKANVLYPNNATDFKPNGHEWLVGDRLKPRGKVNGNGNLDALNEQNRGPRISKMRNPWLSPVDANTGAHGLVENSENCAPEVNRDQFNRADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
688		33		66	0.997452
714		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain