SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene845

Length: 982 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene845

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2927	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] dbj\|BAB10753.1\| cotton fiber expressed protein 1-like protein [Arabidopsis thaliana] gb\|AAM20670.1\| cotton fiber expressed protein 1-like protein [Arabidopsis thaliana] gb\|AAN15646.1\| cotton fiber expressed p	-	-	9.0e-17	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	protein	-	-	7.41243e-26	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF761, plant	IPR008480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA37

Fln msg: Distance to subject end: 78 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 275 - 328

Fln protein: MKNLKSSAGILNRMVEVMKLCFMALSMVSVPVFLKPAFVASYEFVSVVFPRMRETFSAWLTPTVLYVLVNCIILAILANSNLQHGFNIMGSSYEEQNPSADRQKPQGEEEEPVYEKVPTERSGTTDLEEEEKPVYDKESTERSGTTELEEEEVSSLARSERIRNRDVRKVERPSATLHFKKLHRRSASAKSAMEVKSLDISRPKEEAASLEATPLDSLRAEEQEASLDATSLDISQSKEKAASLEATWKAIMEAQRAPHTRHLRKSETWETARRG

Protein Length: 276

Fln nts: ATGGGAAGCGGGACGACCTCCTTTTCTTGTCTTGTCAAAATCAAGATTCACTACCTTTGGCTCTGCCATCACCGGCTTCTCTGTTATTGGCCTTCTGCAGATTTGCTTTGCTGATCTTCACAATTGAAGAAATCGGATCGATCTGAGTGTTGGAT_-_ATGAAGAATCTTAAGTCGTCTGCCGGGATTCTGAACAGGATGGTTGAAGTGATGAAGCTCTGCTTCATGGCTTTGTCCATGGTCTCTGTTCCTGTGTTCCTGAAGCCTGCATTTGTTGCTTCGTATGAATTCGTTTCCGTTGTCTTTCCCCGAATGCGGGAGACATTCTCGGCGTGGCTGACGCCTACAGTTCTTTATGTGTTAGTGAACTGTATTATTCTCGCCATTCTTGCCAATTCAAACCTGCAACACGGATTTAACATAATGGGAAGCTCATATGAGGAGCAGAACCCATCGGCCGATCGTCAGAAGCCGCAGGGGGAGGAAGAGGAGCCGGTTTATGAGAAAGTACCGACGGAAAGATCCGGCACAACGGATTTAGAAGAGGAGGAGAAGCCGGTTTATGATAAAGAATCGACAGAAAGATCCGGCACAACGGAATTGGAAGAGGAGGAGGTCAGCTCCCTAGCAAGATCTGAGAGGATTCGAAACCGAGACGTCCGTAAGGTAGAAAGGCCTTCAGCGACCTTGCACTTTAAAAAGCTTCACAGGAGATCTGCGAGTGCAAAGTCGGCCATGGAGGTCAAATCGCTGGATATTTCGCGGCCGAAGGAGGAAGCAGCGTCTCTGGAGGCCACGCCACTGGATTCTTTGCGGGCGGAGGAGCAAGAAGCCAGTCTGGACGCCACATCGCTGGATATTTCGCAGTCGAAGGAGAAAGCAGCGTCTCTGGAGGCGACGTGGAAGGCCATCATGGAAGCGCAACGTGCTCCTCATACGCGACACCTTCGGAAATCTGAGACCTGGGAGACGGCCCGCCGTGGCGA

Fln Alignment:

Contig845___VMKLCFMALSMVSVPVFLKPAFVASYEFVSVVFPRMRETFSAWLTPTVLYVLVNCIILAILANSNLQHGFNIMGSSYEEQNPSADRQKPQGEEEEPVYEKVPTERSGTTDLEEEEKPV-YDKXXXXXXXXXXXXXXXXXXXXXXXXIRNRDVRKVERPSATLHFKKLHRRSAS-----AKSAMEVKSLDISRPKEEAASLEATPLDSLRAEEQ---EASLDATS-LDISQSKEKAASLEATWKAIMEAQRAPHTRHLRKSETWETA
D5AA37________________LLKLSILVLGFISFVHFGLPSV---RHFILHTVPSLWLSFSSWLNPPYLYIILNCIILTIAATSSLHQKL----KTEESESNSHDYKAPPPEISYRYQSPPPSELKYQYQIGFQKKPISYEQYSLVP----------------------------EEP----HFTKQIQEDDEDADFISRSNWSPEASCITTAATTTTNMEEKPLVSSRFTHKRYAKASPDAKSPLRIARPK-KGETLEYTWKTLTERRHPPLTRHLRKSETWDSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain