SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene786

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene786
ATGGGGGCTTATCCGTCTTCTCAGGAAACGCAGGCACTATTATGATGCACTGTCACAACATTCATGCCATTTACAAGGGCACAGGAGAAGTCTTCGTAGAGGTTGAAGAAGCAGAGATCCCACCAAATTTCCATGACCAAAGGAGATATGTCGGGCATTATAATGTTCAAGAACCAGTTGCAGGAATATGTGCAGAAAGCATCCCTGCCCAAGCCTTCTTACAAGACTACACAAGAAGGGCCTGCCCATCAGCCGAAATTCCACATCAACTGTTATTGTCAATGGATCAGCTATG

Ace file of the UniGene biog2_v2.0_unigene786 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2854	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DsRNA-binding protein LH1 n=11 Tax=Brassica RepID=Q5IZK8_BRAOC	-	-	2.0e-30	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	dsrna-binding protein	-	-	7.48388e-35	62%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADH3

Fln msg: Distance to subject end: 461 aas, your sequence is shorter than subject: 54 - 505

Fln protein: MTKGDMSGIIMFKNQLQEYVQKASLPKPSYKTTQEGPAHQPKFHINCYCQWISY

Protein Length: 55

Fln nts: ATGGGGGCTTATCCGTCTTCTCAGGAAACGCAGGCACTATTATGATGCACTGTCACAACATTCATGCCATTTACAAGGGCACAGGAGAAGTCTTCGTAGAGGTTGAAGAAGCAGAGATCCCACCAAATTTCC_-_ATGACCAAAGGAGATATGTCGGGCATTATAATGTTCAAGAACCAGTTGCAGGAATATGTGCAGAAAGCATCCCTGCCCAAGCCTTCTTACAAGACTACACAAGAAGGGCCTGCCCATCAGCCGAAATTCCACATCAACTGTTATTGTCAATGGATCAGCTATG

Fln Alignment:

Contig786___MFKNQLQEYVQKASLPKPSYKTTQEGPAHQPKF
D5ADH3________________MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
214		33		66	0.997452
215		66		33	0.997452
260	66	33			0.997452
261	66	33			0.997452
262		33		66	0.997452
263	66	33			0.997452
264	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain