SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene774

Length: 1130 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene774

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17304	15/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SGL multi-domain protein	-	-	4.0e-05	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	calcium-dependent phosphotriesterase-like protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP33

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 303 - 322

Fln protein: MAMASLSIVFALGIALWASITGFLNLEGSKHKGELVEYESQGWLREYASWDAQNQRFLVSFMEGGLGQIRTDGKEETLVKDEDYAGNATLGFEIDRPRNRVVVVVADALGNRYSALAAYDMKTWRRLFLTKLSGLGDEKSFADDVTVDPTGTAYVTDTKGNKIWRVSPDGSEVTEIRSPVFTSFPGRLPLNLVGLNGIVYHPDGFLLAIHTWAGVLFKVSLDGSSVRAVNMSALLLLGDGIALLSPDRLVVASGMPSARIVESRDGWQSASLTHRYVGPMHRIATCATVKDDGKVFESHMIGM

Protein Length: 304

Fln nts: ATGGGGTGACCACTCATTCAGATACCCATCTGCATTCAAGCTACTCAACTAATCTGTGAGATGTAATTCAAATTTAGGTGGGGTGCCAGCTACCACTGAGCCACTGTCACTTTGCTTGCCTGTAAATGTTAATGGTGCTTCAATTTTATAGGCAGAGGTAACAAACATCTTACACCGAAGTAAGATGACCTGAAATCCCCCGAAGGGTTCTGCAATAATAT_-_ATGGCTATGGCGTCCCTGTCGATTGTATTTGCGCTAGGAATAGCATTATGGGCATCGATCACTGGCTTCCTTAATCTAGAAGGCAGTAAGCACAAGGGAGAACTGGTGGAGTACGAGAGCCAGGGATGGCTGCGAGAGTACGCAAGCTGGGATGCCCAGAATCAGCGGTTTCTGGTTTCTTTCATGGAAGGGGGCCTCGGCCAGATCAGGACGGATGGGAAAGAAGAAACGCTCGTAAAGGATGAGGATTATGCAGGAAATGCGACACTAGGGTTCGAGATCGACAGGCCAAGGAACCGAGTGGTGGTGGTCGTCGCAGATGCGCTGGGAAACAGGTACAGTGCGCTCGCGGCCTACGATATGAAGACATGGAGGCGATTGTTTCTCACCAAGCTCAGTGGGTTAGGGGACGAGAAATCGTTTGCAGATGATGTGACCGTTGATCCAACAGGCACCGCTTATGTGACAGACACGAAGGGGAACAAAATATGGAGAGTGAGCCCGGACGGCTCTGAGGTCACCGAGATACGGAGTCCCGTGTTCACTTCGTTTCCTGGCAGGTTGCCATTGAACTTGGTGGGTCTGAACGGAATCGTGTATCATCCGGATGGCTTCCTGCTCGCCATTCACACCTGGGCGGGCGTGCTCTTCAAGGTGAGTTTGGATGGGAGCAGCGTGAGGGCCGTGAATATGAGCGCTCTATTGCTTCTTGGGGATGGCATCGCGCTCCTTTCTCCGGACCGCCTCGTCGTCGCCTCCGGGATGCCATCGGCGAGGATTGTCGAGAGCAGAGATGGATGGCAGTCGGCCAGCCTAACCCACCGGTATGTTGGGCCCATGCACAGAATCGCTACATGCGCGACTGTTAAGGATGATGGCAAGGTTTTTGaGAGTCATATGATAGGGATG

Fln Alignment:

Contig774___MAMASLSIVFALGIALWASITGFLNLEGSKHKGELVEYESQGWLREYASWDAQNQRFLVSFMEGGLGQIRTDGKEETLVKDEDYAGNATLGFEIDRPRNRVVVVVADALGNRYSALAAYDMKTWRRLFLTKLSGLGDEKSFADDVTVDPTGTAYVTDTKGNKIWRVSPDGSEVTEIRSPVFTSFPGRLPLNLVGLNGIVYHPDGFLLAIHTWAGVLFKVSLDGSSVRAVNMSXXXXXXXXXXXXSPDRLVVASGMPSARIVESRDGWQSASLTHRYVGPMHRIATCATVKDDGKVFESHMIGM
A9NP33________________MAMASLSIVFALGIALWALITGFLNLEDSKLKGELVEYESQGWLREYASWDAQNQRFLVSFVEGGLGQIRMDGKEETLVKDEDYAGNATLGLEIDRPRNRVLVVVADLLGNRYSALAAYDMKTWRRLFLTELSRLGDEKLFADDVTVDATGNAYVTDTKGNKIWRVSPDGSEVTEIRSPVFTSFPSKLPLSLAGLNGIVFHPDGFLLTIHSWAGVLFKVSLDGSSVRAVNMSALLLLGDGLALLSSNRLVVASGMPSARIVESTDGWQSASLTHRYVGPMHRIATCATVKDDGKVFVSHMIGM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
385	87	12			0.992554
746		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain