SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene729

Length: 1369 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene729

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene948	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	heterogeneous nuclear ribonucleoprotein q	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	62%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	62%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 46 aas, putative chimeric sequence, your sequence is shorter than subject: 224 - 376

Fln protein: RVPWVRGIADIEPRRMGARDSRFGVYEGRRFLDERRQPFGRSYDRRASGPAYVRSDSRRNYREDDTYFDRRARPSGRSVGTVTRRSSYRDDYAYQGAGYAESMPPRRPPYPEDSYSHRMNGMSTYSDGHIRDYAGASGSKRPYSDVDDDLPYPGRHSRSRLDYDAGADSRYGGVSRPGQDSQLGYGAGSRTYSSDYLPSGNDVEGGPYPSGGYGRGSSSTSYY*

Protein Length: 225

Fln nts: CAGGGTGCCATGGGTTCGTGGCATTGCTGATATTGAGCCTAGGAGGATGGGAGCACGTGATAGTCGATTTGGTGTTTATGAAGGAAGGCGCTTTCTAGATGAAAGACGTCAACCTTTTGGAAGGTCATATGATAGGAGAGCATCTGGTCCTGCTTATGTACGAAGTGATTCTAGGAGGAATTATAGAGAAGATGATACTTATTTTGATAGGCGAGCTCGACCTTCAGGCAGATCTGTTGGAACTGTTACTAGACGATCCTCATACCGGGATGATTATGCATATCAAGGGGCTGGATATGCTGAGAGCATGCCTCCACGCAGGCCTCCATACCCCGAGGATAGCTACAGTCATCGCATGAATGGAATGTCAACCTATAGTGATGGACATATTCGTGATTATGCAGGGGCATCTGGGTCCAAGCGTCCATACTCAGATGTGGATGATGATCTTCCATACCCAGGTCGGCATTCCAGGAGTCGTTTGGATTATGATGCAGGGGCTGATTCACGTTACGGAGGAGTGTCCAGGCCAGGACAGGATTCCCAACTAGGTTATGGTGCAGGTAGCAGAACTTATTCAAGTGACTACCTGCCTAGTGGCAATGATGTTGAAGGTGGACCTTATCCATCTGGGGGTTATGGACGTGGCAGTAGCTCAACATCATATTATTGA___AAAATTTGGGTACAGAGTCAGATTCAATAAAGCAGAACAGATTTAATTCGAGCACTGGGATACAGTTGTTTAGCCTGGTTCTCTAAGAAAACAAAATCTTTTTGAGTAAATATTATATTCCTCAAGTCTATATAACCTGGTAATTAGGGAGATATTCAAACCAGTGTTAAGTTATGGCTATATATGACGTTCAGAGAGATATTGGGTGTTGTTGAGATGTCAAATTGACAGTATATGATGCCTTAGCAGGAAAAGCTAAGCTTATTTCTTCTCCTGTTGGAGGTTAGCAGATTAGGTGAGCAAGTTAACAACATACTGTTAACCATTTCTGGGTTTTTCCAGAATGAAGTGATAGTTTTTTAGGAGTAATGGCGGATTTAGGATTTATGTCTTCAGACGAATGAAACTCAACTTATTACTAATAGGATGTTTCGGTAACTTGTTTCTTTCAATGAGTAAGTGTTGCCCGCAGTAGGGCCTCAGGAGACAATACACGTTGCATATCATTGATGTTCAGTTATTTTCTACAACATTGCTAAGTATAATTTGGTATTTGATGGAGCTTTACTGAAGCCAGATTTTTGAGTTCCAAGTTCCTTCTATGAAGATAGGAAGGTGGATAAGTTTACTGATATATGGCTACCAAACATTTGAAACGTGGCCAAAATGTGGTTGTTCTTATTTATTGTACTCAGC

Fln Alignment:

Contig729___RSDSRRNY-REDDTYFDRRAR-----PSGRSVGTVTRRSSYRDDYAYQGAG-YAESMPPR--------RPPYPEDSYSHRMNGMSTYSDGHIRDYAGASGSKRPYSDVDDDLPY---PGRHSRSRLDYDAGADSR----YGGVSRPGQDSQLGYGAGSRTYSSDYLPSGN
A9NXS9________________RSNSKRDYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYPEESYGRRID--KPYRDSRGRDYDSVSGSKRPYSAVEEPPRYGEPAMRNSRARLDYGVSASASQYGDYGESVRLGRGSQLGYGGSSARQDSYGLYDGH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
891	75		25		0.996473
983	80		20		0.995493
984		80	20		0.995493
985	80		20		0.995493
1240			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain