SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene702

Length: 575 nt

UniGene Fasta

>biog2_v2.0_unigene702
CAGAGTGTTGCAGGCAGAAGGAAGATATGAGTGAGCTCCAGAAGGCGTGGTTCTACAACGAATATGGATCCGTGGATGTGTTGCAATTCGGTGAAGTCCCTGTGCCAAAGCCGGGGCCGAGCCAGGTTTTAATTAAAATCCGAGCGGCTGCTCTCAATCCCGTCGACTTTAAGAGGCGGCACGGCTTCTTGAGAAGGGCAGATTCTGACTTTCCGGCTGTGCCGGGCTGTGATGCGGCAGGAGTGGTGGTCGAAGTGGGCGATGGTGTTACCAAGTTCAAGAATGGCGATGAGGTCTACAGCGACATCCAGGATTTCGGAGCGGGCAGGCCCAAACAGTGGGGAACCCTCGCCCAGTATACCGTGGTGGAGGAATACCTGGTGGCGCCAAAGCCCAAAAATTTGTCGTTCGAGGAAGCGGCGAGCCTGCCGCTTGCGCTCCTGACTGCGCAGCAGGCGTTCGATATAGCCAAATTTGAGGAGGGGAAGAGCGTGTTCATTGTGGGAGGAGCGGGCGGAGTGGGCAGTCTGGCCATTCAGCTGGCGAGGCATGTCTATGGAGCTTCCAGGATCGTT

Ace file of the UniGene biog2_v2.0_unigene702

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8224	1/3
SustainPine v2.0	sp_v2.0_unigene15725	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	quinone oxidoreductase-like protein [Helianthus annuus]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	quinone oxidoreductase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Pterin-binding	IPR000489	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR79

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 183 - 313

Fln protein: MSELQKAWFYNEYGSVDVLQFGEVPVPKPGPSQVLIKIRAAALNPVDFKRRHGFLRRADSDFPAVPGCDAAGVVVEVGDGVTKFKNGDEVYSDIQDFGAGRPKQWGTLAQYTVVEEYLVAPKPKNLSFEEAASLPLALLTAQQAFDIAKFEEGKSVFIVGGAGGVGSLAIQLARHVYGASRIV

Protein Length: 184

Fln nts: CAGAGTGTTGCAGGCAGAAGGAAGAT_-_ATGAGTGAGCTCCAGAAGGCGTGGTTCTACAACGAATATGGATCCGTGGATGTGTTGCAATTCGGTGAAGTCCCTGTGCCAAAGCCGGGGCCGAGCCAGGTTTTAATTAAAATCCGAGCGGCTGCTCTCAATCCCGTCGACTTTAAGAGGCGGCACGGCTTCTTGAGAAGGGCAGATTCTGACTTTCCGGCTGTGCCGGGCTGTGATGCGGCAGGAGTGGTGGTCGAAGTGGGCGATGGTGTTACCAAGTTCAAGAATGGCGATGAGGTCTACAGCGACATCCAGGATTTCGGAGCGGGCAGGCCCAAACAGTGGGGAACCCTCGCCCAGTATACCGTGGTGGAGGAATACCTGGTGGCGCCAAAGCCCAAAAATTTGTCGTTCGAGGAAGCGGCGAGCCTGCCGCTTGCGCTCCTGACTGCGCAGCAGGCGTTCGATATAGCCAAATTTGAGGAGGGGAAGAGCGTGTTCATTGTGGGAGGAGCGGGCGGAGTGGGCAGTCTGGCCATTCAGCTGGCGAGGCATGTCTATGGAGCTTCCAGGATCGTT

Fln Alignment:

Contig702___MSELQKAWFYNEYGSVDVLQFGEVPVPKPGPSQVLIKIRAAALNPVDFKRRHGFLRRADSDFPAVPXXXXXXXXXXXXXXXTKFKNGDEVYSDIQDFGAGRPKQWGTLAQYTVVEEYLVAPKPKNLSFEEAASLPLALLTAQQAFDIAKFEEGKSVFIVGGAGGVGSLAIQLARHVYGASRIV
A9NR79________________MSKLQKAWFYNEYGSIDVLQFGEVPVPTPGPGQLLVKIRAAALNPVDFKRRDGLFRNKDSDFPAVPGCDAAGVVVEVGDGVSKFKNGDEVYSDIQDFGAGRPKQWGTLAQYTVVEEYLVAPKPTNLSFEEAASLPLALLTAQQAFDIAKFEKGKSVFIVGGAGGVGSLAIQLARHVYGASRIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain