SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene570

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene570
CAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTG

Ace file of the UniGene biog2_v2.0_unigene570 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15539	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	probable nucleoredoxin 1-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	71%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	71%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: Distance to subject end: 181 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 83 - 586

Fln protein: KDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDF

Protein Length: 84

Fln nts: CAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTG

Fln Alignment:

Contig570___KDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDF
B8LKG4________________KERLDELEAEEEAKREAQTLESLLVSDERNFVINHGDAQVLVSELVGKTVALYFSAHWCPPCRSFTPELTKVYNELKERGETF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain