SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene514

Length: 444 nt

UniGene Fasta

>biog2_v2.0_unigene514
AGAAGTGCTCTTCAAGAGGATTTTGAACGAATCCTTCACTCTGCATTTTTGGAACAATGTGACATCAAAGATAGTTCCTGAAACTGGTAGTCTTGTTGAGAAGGTCCTTAATTATCATTGCCTCCATTGTACTGATTTCTTGTAGTATTATAAATCGATGTGATTGTATGTAATTTTATGCATTATTATAATGTTTGAAGTGGCATAGGTGCCCAGTCGAGTTCCAAAATAGTGGATCTGACTCCAAATGTTGGATGGCAAGGCTTTCATAGTCTTGTATATGTAAACTTCATGTGCCAGGATATCTGTAAGCAGAAATTTGGTACCATGTGCTCTATGGGTACAATCATTGGAGATGCATGGCTTTTGTGAGCTACGAATAGAAGGCAATGTGTGATGAATTAAATTACAATTGCAAGGCTTTTATTCAGGAATCTGATGGAA

Ace file of the UniGene biog2_v2.0_unigene514

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] gb\|AAG51645.1\|AC018908_11 hypothetical protein; 81821-83128 [Arabidopsis thaliana] gb\|AEE33771.1\| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana]	-	-	7.0e-33	27%
FL-Next	sp=Uncharacterized protein At4g19900; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyltransferase, DXD sugar-binding motif	IPR007577	-	0.0	-
Sma3	Alpha 1,4-glycosyltransferase domain	IPR007652	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P0C8Q4

Fln msg: your sequence is shorter than subject: 48 - 644

Fln protein: EVLFKRILNESFTLHFWNNVTSKIVPETGSLVEKVLNYHCLHCTDFL*

Protein Length: 49

Fln nts: AGAAGTGCTCTTCAAGAGGATTTTGAACGAATCCTTCACTCTGCATTTTTGGAACAATGTGACATCAAAGATAGTTCCTGAAACTGGTAGTCTTGTTGAGAAGGTCCTTAATTATCATTGCCTCCATTGTACTGATTTCTTGTAG___TATTATAAATCGATGTGATTGTATGTAATTTTATGCATTATTATAATGTTTGAAGTGGCATAGGTGCCCAGTCGAGTTCCAAAATAGTGGATCTGACTCCAAATGTTGGATGGCAAGGCTTTCATAGTCTTGTATATGTAAACTTCATGTGCCAGGATATCTGTAAGCAGAAATTTGGTACCATGTGCTCTATGGGTACAATCATTGGAGATGCATGGCTTTTGTGAGCTACGAATAGAAGGCAATGTGTGATGAATTAAATTACAATTGCAAGGCTTTTATTCAGGAATCTGATGGAA

Fln Alignment:

Contig514___FKRILNESFTLHFWNNVTSKIVPETGSLVEKVLNYHCLHCTDFL
P0C8Q4________________FKKILNESLTFHFWNSVTSSLIPEPESLVAKFLDHSCIRCSDVL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
231	75	25		0.996473
233		25	75	0.996473
248	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain