SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene474

Length: 1233 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene474 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11494	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative transcription elongation factor SPT5 homolog 1 emb\|CAB52557.1\| putative protein [Arabidopsis thaliana] emb\|CAB77960.1\| putative protein [Arabidopsis thaliana]	-	-	55%
FL-Next	sp=Putative transcription elongation factor SPT5 homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	global transcription factor group	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	77%
Blast2go	positive regulation of transcription elongation from RNA polymerase II promoter	GO:0032968	Biological Process	77%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	77%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	77%
Blast2go	transcription elongation regulator activity	GO:0003711	Molecular Function	77%
Blast2go	ribosome	GO:0005840	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Transcription elongation factor Spt5, NGN domain	IPR005100	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Transcription antitermination protein, NusG, N-terminal	IPR006645	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Transcription elongation factor Spt5	IPR017071	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9STN3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 388 - 1054

Fln protein: K**G*QCSLNSRFGALRPPSGALPSSRRPPRGGNLQSDGGGRHRGGRRREDSLIGRTVKIRLGPFKGYRGRVVDIHGASVRIELESQMKVVTVNRDHLAETPTTATPARESPRYGAGSETPMHPSRTPMHPYMTPMRDPSATPIHDGMRTPMRDRAWNPYATMTPMRDSWEEGNPGSWGAGTPPYQPGTPSTRPYEAPTPGSGWANTPGGSYEAGTPRDNNSPSYANVPSPYLPSTPGGPPMTPSAPTYLPGTPGGQPMTPGNVGLDVMSPTTGGGQEGGLISDIVVTVRRPGEDPQIAVIRDVLSDGTCKVLLGLSGDDGEVVTAAASEIDIIPPKKSDKIKIINGEQRGGTGKLIGIDGADGIVKMDETLDIKILDMSNLAKLAS*

Protein Length: 389

Fln nts: AAGTGATAGGGATAGCAATGCTCATTGAACTCACGATTTGGAGCTTTGAGGCCACCATCAGGTGCTCTGCCTTCCTCGAGGAGGCCACCGAGAGGTGGTAATCTCCAATCAGACGGTGGAGGAAGACATAGAGGAGGCAGGAGGAGAGAAGATTCCTTGATTGGAAGAACTGTGAAAATCCGTCTGGGTCCATTTAAGGGTTATCGTGGGCGTGTTGTAGATATCCACGGGGCATCTGTGAGGATTGAACTAGAATCTCAGATGAAAGTTGTTACAGTTAATCGTGATCATCTGGCTGAGACACCAACAACAGCAACTCCTGCCAGAGAATCTCCTCGGTATGGAGCTGGAAGTGAGACACCTATGCATCCATCAAGAACACCAATGCATCCATACATGACTCCAATGAGGGATCCATCTGCAACCCCCATCCATGATGGCATGAGAACACCTATGCGTGATCGTGCATGGAATCCATATGCAACAATGACTCCGATGAGAGACAGTTGGGAGGAGGGAAATCCAGGTTCATGGGGTGCTGGAACTCCTCCGTATCAGCCTGGAACTCCTTCAACACGGCCTTACGAGGCCCCTACACCTGGATCTGGGTGGGCCAATACACCCGGTGGTAGCTACGAAGCTGGCACACCTCGTGATAATAACAGTCCCAGCTATGCAAATGTTCCGAGTCCGTATCTGCCATCTACTCCCGGTGGACCTCCGATGACTCCTAGTGCTCCTACTTATTTGCCTGGCACTCCTGGTGGTCAACCAATGACACCTGGAAATGTTGGATTGGATGTTATGTCTCCTACTACAGGAGGCGGGCAAGAAGGCGGCTTAATTTCGGATATAGTAGTTACTGTGCGTAGACCTGGTGAAGATCCTCAAATAGCTGTCATCAGGGATGTTCTCTCGGATGGCACATGCAAAGTGTTACTAGGACTTTCAGGTGATGATGGTGAAGTAGTGACAGCTGCAGCTTCCGAAATTGATATTATACCGCCCAAGAAGTCAGACAAGATCAAGATTATTAATGGAGAGCAAAGGGGCGGAACTGGGAAGCTTATAGGTATAGATGGAGCAGATGGCATTGTCAAAATGGATGAGACACTCGACATTAAAATCTTAGATATGAGCAATCTCGCTAAACTAGCTTCGTAG___TGCCACGGCTGGCTTATTTTAAAACCATGCTGGGGACTTTCTAGGGTTTCGTCTTTTATCTTCGCTCGT

Fln Alignment:

Contig474___SRFGALRPPSG--ALPSSRRPPRGGNLQSDXXXXXXXXXXREDSLIGRTVKIRLGPFKGYRGRVVDIHGASVRIELESQMKVVT----------------VNRDHLAEXXXXXXXAR--------ESPRYGAGSETPMHPSRTPMHPYMTPMRDPSATPIHDGMRTPMRDRAWNPYATMTPMRDSWEEGNPGSWGAGTPPYQPGTPSTRPYEAPTPGSGWANTPGGSY-EAGTPRDNNSPSYANVPSPYLXXXXXXXXXXXXXXTYLXXXXXXXXXXXGNVGLDVMSPTTGGGQEGGLISDIVVTVRRPGEDPQIAVIRDVLSDGTCKVLLGLSGDDGEVVTAAASEXXXXXXXXXXXXXXINGEQRGGTGKLIGIDGADGIVKMDETLDIKILDMSNLAK
Q9STN3________________SRYGNFKAPAPVPSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLGTTVKIRLGPFKGYRGPVVEVKGNSVRVELE--MKIVTGKPLNSLLRVWVSTCRTNSNNSSYMQLIGVQYQIMLRQHRLDTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGT-SPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGS-AYANAPSPYL-PSTPGQPMTPSSASYL-PGTPGGQPMTPGTGLDVMSPVIGGDAEAWFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSG-EGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
263	88	11			0.923564
265		11		88	0.923564
267		88		11	0.923564
277	87	12			0.992554
278		12		87	0.992554
280	87	12			0.992554
281		87		12	0.992554
292		16		83	0.994512
293	83	16			0.994512
294		16	83		0.994512
742	66		33		0.997452
935		14		85	0.993533
1000		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain