SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene420

Length: 757 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene420 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15776	9/11
SustainPine v2.0	sp_v2.0_unigene65001	1/11

Source	Descriptions	Term	Type	Identity
AutoFact	Delta-aminolevulinic acid dehydratase n=1 Tax=Picea sitchensis RepID=B8LR35_PICSI	-	-	87%
FL-Next	sp=Delta-aminolevulinic acid dehydratase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	aminolevulinic acid dehydratase	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porphobilinogen synthase	IPR001731	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
261	20		80		0.995493
315	28		71		1.0
519	87		12		0.992554
567	57			42	1.0
573		14		85	0.993533
579	42		57		1.0
651	80	20			0.995493
669		40		60	1.0
670	40			60	1.0
673	60		40		1.0
675	60			40	1.0
677			60	40	1.0
678	60			40	1.0
679	60	40			1.0
688	60	20	20		0.99255
689		20	20	60	0.99255
690		20	20	60	0.99255
691	60	20		20	0.99255
692	80			20	0.995493
693		80		20	0.995493
694	75		25		0.996473
695	75			25	0.996473
698	75		25		0.996473
700	75	25			0.996473
701			75	25	0.996473
703	75	25			0.996473
704		25	75		0.996473
705	50	25			0.995533
706	75	25			0.996473
707	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain