SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene418

Length: 926 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene418

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1184	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	smad nuclear-interacting protein 1 [Arabidopsis thaliana] sp\|Q8W4D8.1\|DDL_ARATH RecName: Full=FHA domain-containing protein DDL; AltName: Full=Protein DAWDLE gb\|AAL32704.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN15324.1\| Unknown protein [Arabidopsis	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	fha domain-containing protein ddl	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of developmental growth	GO:0048638	Biological Process	71%
Blast2go	cell proliferation	GO:0008283	Biological Process	71%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	71%
Blast2go	RNA binding	GO:0003723	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	0.0	-
Sma3	Domain of unknown function DUF1777	IPR013957	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA17

Fln msg: Separated hits, possible frame ERROR between 820 and 822, Distance to subject end: 72 aas, your sequence is shorter than subject: 309 - 393

Fln protein: WRRRSSRSLSPVRGGRRRPSRSLSPARGGRRRPSRSLSPVRASRRRSSRSKSPTSRKSPYRRTSPVPPRTAARTRSPGGTKVHVHVKSPVQSRSPIQARSPVRARSLKRAMSPKSPSRSSSPRSKQMRQTREGKEFDRVKDRVHDGRSIEDHDRGRHRDKDKGSSRDGTREDKGSSRDGTREARGRDKYLDTSSMSPNDHRQRRKHGSRSPPHRSNERGPEKPKTANAGAYDEVPNQSAEEMPGSENPSHDSLAKMKAAEEALQVKQNDKVKxxSFELSGKLAAETNKVRGIALLFNEPPDARKPTIRW

Protein Length: 310

Fln nts: ATGGAGGAGGAGGTCATCGCGGTCATTATCTCCCGTTCGGGGAGGGAGGAGGAGGCCATCACGGTCATTATCTCCCGCTCGAGGAGGTAGGAGGAGGCCATCGCGGTCACTATCTCCTGTTCGAGCAAGTAGGAGGAGGTCGTCGCGTTCAAAATCTCCCACTAGTAGAAAGTCACCATATCGGCGAACATCTCCTGTTCCACCAAGGACAGCTGCAAGGACCAGGTCTCCCGGTGGAACAAAGGTTCATGTTCATGTGAAGTCTCCAGTCCAATCGAGATCTCCCATTCAGGCAAGGTCTCCTGTTCGAGCACGATCTCTCAAACGAGCGATGTCCCCTAAGTCTCCTTCTCGATCATCCTCTCCTCGCTCCAAGCAGATGAGACAAACCCGGGAAGGCAAGGAATTTGATAGAGTTAAGGATAGGGTGCATGACGGAAGAAGCATTGAGGACCATGACAGAGGCAGGCATAGAGATAAAGACAAAGGCTCAAGCAGAGACGGAACAAGGGAGGACAAAGGCTCAAGCAGAGATGGAACAAGGGAGGCAAGAGGGCGAGATAAGTACCTGGATACCTCTTCAATGTCTCCAAACGATCACAGACAAAGACGGAAACATGGTTCTCGATCACCACCTCATAGAAGTAACGAGCGTGGACCAGAGAAGCCCAAAACTGCAAATGCTGGAGCTTATGACGAGGTACCAAATCAAAGCGCAGAAGAGATGCCTGGGAGTGAAAATCCTTCCCATGATTCATTAGCTAAGATGAAAGCTGCTGAGGAAGCTCTACAAGTCAAACAAAATGATAAGGTCAAACCxxxTTCATTTGAACTGTCAGGCAAGCTTGCTGCAGAAACCAACAAAGTAAGGGGCATAGCATTGTTATTCAATGAACCACCTGATGCACGGAAACCAACGATCAGATGG

Fln Alignment:

Contig418___VPPRTAARTRSPGGTKVHVHVKSPVQSRSPIQARSPVRARSLKRAMXXXXXXXXXXXXXXQMRQTREGKEFDRVKDRVHDGRSIEXXXXXXXXXXXXXSSRDGTR---EDKGSSRDGTREARGRDKYLDTSSMS-------PNDHRQRRKHGSRSPPHRSNERGPEKPKTANAGAYDEVPNQSAEEMPGSENPSHDSLAKMKAAEEALQVKQNDKVKPxSFELSGKLAAETNKVRGIALLFNEPPDARKPTIRW
D5AA17________________VPLRTAARTRSPSGTKARVHVKSPVQLRSPIQARSPVRARSLKRAMSPRSPSRSPSPRAKRMRQTQEGREFDRVKDREYDRRSNE--------------DHDRSRHKDKDKGSSRDGTREARGRDKYLDPSSISRHSRSISPNDHRQTRKHGSQSPPHRSSERGPDKPKTSNAGAYDEVPNQSAQEMPGSENPSHDSLAKMKAAEEALEVKENDKVKPxSFELSGKLAAETNKVRGIALLFNEPPDARKPTIRW

SNPs (tot: 3)

Position	C %	G %	T %	Probability
390	75		25	0.996473
391	75	25		0.996473
392	75	25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain