SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene388

Length: 523 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene388
CCCATCATCAGAGATGGACGGCTATGCAGATTCTGTGAGTTCTTCCCCTAGGTCTATAGGGACTGGAAGGGGGACAGATCCTGAATTGCAGAGATGGGAGGATGGGAGTTCAAACAAGGTTAGGTTCATGTACAGCTATGGAGGCAAGATTCTTCTCAGGCCCCATGACAATCAGCTCTGTTATCTGGGTGGAGACACCAGGATGGTGGCTGTGAGCAGGAACATAACATATGATGATCTCATTGCCAAGTTCTCCAAGATGTGTGGAAGCAGTGTGACCATCAAATACCAGCTGCCCAATGAGGATCTGGATGCCTTGATCTCAGTAACAACGGATGAAGATCTGGAGAACATGATGGAGGAGTATGACAGGTTCCAGCAGACTAGCATGAAGTCATCCAGGTTAAGAATTTTCTTATTCCCTGAAAAGCTTGAAACTATATCTAGTCTTGGTTCTTTGCTTGATAATTCTAAGAGAGAGCACTGGTTTGTTGATGCATTGAATGGGACTCCTATCCTGTCA

Ace file of the UniGene biog2_v2.0_unigene388 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8174	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJW8_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	atp binding	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	61%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSA8

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 170 - 640

Fln protein: MDGYADSVSSSPRSIGTGRGTDPELQRWEDGSSNKVRFMYSYGGKILLRPHDNQLCYLGGDTRMVAVSRNITYDDLIAKFSKMCGSSVTIKYQLPNEDLDALISVTTDEDLENMMEEYDRFQQTSMKSSRLRIFLFPEKLETISSLGSLLDNSKREHWFVDALNGTPILS

Protein Length: 171

Fln nts: CCCATCATCAGAG_-_ATGGACGGCTATGCAGATTCTGTGAGTTCTTCCCCTAGGTCTATAGGGACTGGAAGGGGGACAGATCCTGAATTGCAGAGATGGGAGGATGGGAGTTCAAACAAGGTTAGGTTCATGTACAGCTATGGAGGCAAGATTCTTCTCAGGCCCCATGACAATCAGCTCTGTTATCTGGGTGGAGACACCAGGATGGTGGCTGTGAGCAGGAACATAACATATGATGATCTCATTGCCAAGTTCTCCAAGATGTGTGGAAGCAGTGTGACCATCAAATACCAGCTGCCCAATGAGGATCTGGATGCCTTGATCTCAGTAACAACGGATGAAGATCTGGAGAACATGATGGAGGAGTATGACAGGTTCCAGCAGACTAGCATGAAGTCATCCAGGTTAAGAATTTTCTTATTCCCTGAAAAGCTTGAAACTATATCTAGTCTTGGTTCTTTGCTTGATAATTCTAAGAGAGAGCACTGGTTTGTTGATGCATTGAATGGGACTCCTATCCTGTCA

Fln Alignment:

Contig388___YADSVSSSPRSIG-TGRGT-DPEL---------QRWED-----GSSNKVRFMYSYGGKILLRPHDNQLCYLGGDTRMVAVSRNITYDDLIAKFSKMCGSSVTIKYQLPNEDLDALISVTTDEDLENMMEEYDRFQQ--------------TSMKSSRLRIFLFPEKLE-TISSLGSLLDNSKREHWFVDALNGTPILS
C0PSA8________________YPDSVNSSPRSVGRASRGTVDSEYSAPHHHHHNQRWDQDPESSGGSGSVRFMCSYGGRILPRPHDNQLRYVGGDTRIVAVARTVSYSLLISKLSKLCGSAVTLKYQLPNEDLDALISVTTDEDLENMMDEYDRLQQSPGAINSSKSSSSSSSSSSSRLRLFLFPAKPESSTSSLGSLLESSKREHWFVDALNGVPVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain