SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene366

Length: 563 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene366
TCCAAGACATGATAAATGAAGTTGATGCAGATGGCAATGGTACCATTGATTTTCCTGAGTTTCTTAATCTCATGGCGAGGAAGATGAAGGATACTGATTCTGAAGAGGAGCTGAAGGAAGCATTCCGTGTTTTTGACAAGGATCAAAATGGTTTTATCTCTGCTGCTGAGCTACGTCATGTCATGACAAACCTCGGAGAGAAGCTTACTGATGAGGAAGTGGATGAAATGATTCGGGAGGCTGATGTGGATGGAGATGGACAAATCAATTATGAGGAATTTGTGAAAGTTATGATGGCAAAGTGAACCTTTTACATGTTTGTCCTGAATGTCCTGAATGTATTGAGATTATTGTAGGCTCAGGTGCCTCCACTGAATACTTGTATGCAGCATTTTTTCAGAACTTCATGATTTACCTCTTCTGTATGGGGGCATGCTGCAATGTTGTGTGTTTACTTTGCAAATCTAACTCTGAACCTCCTTGGTTATATTTGCCTTTGGGATTTGTAAGGACTGTTTAGATATGGCTTTTTTCCTTATTGGGATCAAATGTAGATTGTTTTG

Ace file of the UniGene biog2_v2.0_unigene366 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25367	1/14
SustainPine v2.0	sp_v2.0_unigene60686	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-7 n=219 Tax=Eukaryota RepID=CALM7_ARATH	-	-	96%
FL-Next	tr=Putative uncharacterized protein Sb1599s002010; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	100%
Blast2go	calmodulin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	98%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C6JSN5

Fln msg: atg_distance in limit (1-15): atg_distance = 14,

Fln protein: MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*

Protein Length: 100

Fln nts: TCCAAGAC_-_ATGATAAATGAAGTTGATGCAGATGGCAATGGTACCATTGATTTTCCTGAGTTTCTTAATCTCATGGCGAGGAAGATGAAGGATACTGATTCTGAAGAGGAGCTGAAGGAAGCATTCCGTGTTTTTGACAAGGATCAAAATGGTTTTATCTCTGCTGCTGAGCTACGTCATGTCATGACAAACCTCGGAGAGAAGCTTACTGATGAGGAAGTGGATGAAATGATTCGGGAGGCTGATGTGGATGGAGATGGACAAATCAATTATGAGGAATTTGTGAAAGTTATGATGGCAAAGTGA___ACCTTTTACATGTTTGTCCTGAATGTCCTGAATGTATTGAGATTATTGTAGGCTCAGGTGCCTCCACTGAATACTTGTATGCAGCATTTTTTCAGAACTTCATGATTTACCTCTTCTGTATGGGGGCATGCTGCAATGTTGTGTGTTTACTTTGCAAATCTAACTCTGAACCTCCTTGGTTATATTTGCCTTTGGGATTTGTAAGGACTGTTTAGATATGGCTTTTTTCCTTATTGGGATCAAATGTAGATTGTTTTG

Fln Alignment:

Contig366___QDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
C6JSN5________________QDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
460		87		12	0.992554
482	85	14			0.993533
483		14		85	0.993533
485	14			85	0.993533
511	80			20	0.995493
529	66		33		0.997452
548		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain