SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene345

Length: 1233 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene345

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4924	16/19
SustainPine v2.0	sp_v2.0_unigene17737	3/19

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RNU7_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein phosphatase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	87%
Blast2go	metal ion binding	GO:0046872	Molecular Function	87%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	87%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL4

Fln msg:

Fln protein: NQIWSLFYARVACNNGRCTCSNSRFDNCTSFFGVYDGHGGKVVSKFCAKYLHTQVLKSEAYTNGDLCGSLRRAFYRMDEMMRGQRGWRELAILGDKFNKFTGLLEGFIWSSSPRNIENKDKDQEDDWAFEQGPHADFSGPTSGSTACVALLQNNQLIVANAGDSRCVLSRKGQSYNLSRDHKPELEIERDRILRAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACDGVWDVMSSQQVVDFIHEHINVDDKLSTVCEKVLAKCLAPSTALGEGCDNMTIIIVQFKKRSENKCSVNPELSS*

Protein Length: 330

Fln nts: AATCAGATATGGTCTCTCTTCTATGCAAGGGTGGCGTGCAACAATGGAAGATGCACATGCAGCAATTCCAGATTTGATAATTGCACATCTTTTTTTGGTGTTTATGATGGTCATGGAGGTAAAGTTGTATCGAAGTTTTGTGCAAAGTATCTTCATACACAAGTTTTGAAGAGTGAGGCCTACACAAATGGTGATTTATGTGGAAGTCTTCGAAGAGCATTTTACAGGATGGATGAGATGATGCGTGGCCAAAGGGGCTGGAGGGAATTAGCTATACTTGGGGATAAGTTCAACAAATTCACTGGCTTATTAGAGGGATTTATTTGGTCTTCTTCTCCAAGAAACATAGAGAACAAAGATAAAGATCAAGAAGATGACTGGGCATTTGAACAGGGACCACATGCTGATTTTTCTGGGCCAACTTCCGGAAGCACGGCATGTGTTGCGCTTCTCCAAAATAATCAGCTTATTGTGGCAAATGCTGGTGATTCCCGTTGTGTCCTCTCAAGAAAGGGTCAGTCATACAACTTGTCACGAGATCACAAGCCAGAGCTTGAGATTGAAAGGGATCGAATTCTTCGAGCTGGAGGATTCATTCATGCTGGACGTATCAATGGAAGCTTAAATTTGGCGAGGGCTATTGGAGATATGGAATTCAAACAAAACAAATTTCTCCCTGCTGAAAAACAGATTGTAACTGCGAATCCAGATATAAATGTTGTGGAGCTATGTGAGGATGATGAGTTCATTGTCTTGGCATGCGATGGAGTCTGGGATGTCATGTCTAGCCAACAAGTTGTTGACTTTATACATGAGCACATTAATGTTGATGATAAACTTTCAACAGTCTGTGAAAAAGTGCTTGCCAAATGTCTTGCACCATCAACAGCTTTAGGTGAGGGTTGTGATAACATGACCATCATCATAGTGCAGTTCAAGAAGAGATCTGAAAATAAATGCAGTGTAAACCCTGAATTATCGTCTTGA___ACTTTATCATGAAATTGAGATTTCATGTATATGTATTTACTATTTAGATACTACTGCTGCCTGTTCATAGCTGCACCTGTAGCCCTGGAATCCTCAGTGTGCAGTGATTGAGTTGTGGATATGCGAATGCAGAAATGTGATGTTTCCAAATGTTGCTTCTCTGTTCAGAAATTTAGCTAGTCATTTTCAAACAGGACCATTAAATTGGAAAAATGCATCCTATTTGCCATCTGTATTGAAATTTTC

Fln Alignment:

Contig345___FDNCTSFFGVYDGHGGKVVSKFCAKYLHTQVLKSEAYTNGDLCGSLRRAFYRMDEMMRGQRGWRELAILGDKFNKFTGLLEGFIWSSSPRNIENKDKDQEDDWAFEQGPHADFSGPTSGSTACVALLQNNQLIVANAGDSRCVLSRKGQSYNLSRDHKPELEIERDRILRAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACDGVWDVMSSQQVVDFIHEHINVDDKLSTVCEKVLAKCLAPSTALGEGCDNMTIIIVQFKK
A9NNL4________________FDSCTSFFGVYDGHGGKVVARFCAKYLH-HVVKSEADRNGDLCESLQTAFLRMDEMMKGQRGQRELAILGDKENKDT--TSDGITRSTPRNVEIRNEVEDDDWTSDEA-HEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSRKGQAYNLSRDHKPDLENEKERIIQAGGFIHAGRVNGSLNLARAIGDMELKQNKFLPPEKQIITACPDINVVELCEDDEFLVLACDGVWDVMSSQEAVDFIREHINVEKNLSAVCEKVLDKCLAPNTTLGEGCDNMTIIVVQLKQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
298	75			25	0.996473
397			66	33	0.997452
398	66			33	0.997452
662	66			33	0.997452
663	66		33		0.997452
664		66	33		0.997452
665	66		33		0.997452
790	83		16		0.994512
984	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain