SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene204

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene204
ATGGAGACAGAAAGGCATAGTGGCATTGGTGAGCTGTTAGAAATTTTAGGGAGCATAATTAATGGTTTTGCACTTCCCATGAAAGAGGAGCATAAATTGTTTCTAGTAAGAGCTCTTATTCCTCTACACAAACCTAAGTGTGTTGCTCTTTATCATCAGCAACTCTCCTATTGCATCACACAGTTTGTTGAAAAAGACTACAAATTGGCAGATACTGTTATTAGGGGTTTATTGAAGTACTGGCCTGTTACAAACTGTCAAAAGGAGGTATTGTTTCTGGGGGAGCTAGAGGAGGTCTTAGAATCTACACAAGCTGCAGAATTTCAGCGCTGTATGGTCCCTCTATTTCGGCAGATTGGTCGGTGCCTCAATAGCTCACATTTCCAGGTTGCTGAACGAGCTCTCTTCTTGTGGAACAATGACCATATAGTCAGTTTGATAGCTCAAAAATCGCAGTGTTC

Ace file of the UniGene biog2_v2.0_unigene204 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8568	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana] sp\|O04376.1\|2A5B_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Short=AtB' beta; Short=PP2A, B'	-	-	64%
FL-Next	sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	89%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	signal transduction	GO:0007165	Biological Process	85%
Blast2go	regulation of phosphorylation	GO:0042325	Biological Process	85%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	85%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein phosphatase type 2A complex	GO:0000159	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Platelet-derived growth factor (PDGF)	IPR000072	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	-
Sma3	SecE subunit of protein translocation complex	IPR005807	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04376

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 153 - 499

Fln protein: METERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPKCVALYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLESTQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIVSLIAQKSQC

Protein Length: 154

Fln nts: ATGGAGACAGAAAGGCATAGTGGCATTGGTGAGCTGTTAGAAATTTTAGGGAGCATAATTAATGGTTTTGCACTTCCCATGAAAGAGGAGCATAAATTGTTTCTAGTAAGAGCTCTTATTCCTCTACACAAACCTAAGTGTGTTGCTCTTTATCATCAGCAACTCTCCTATTGCATCACACAGTTTGTTGAAAAAGACTACAAATTGGCAGATACTGTTATTAGGGGTTTATTGAAGTACTGGCCTGTTACAAACTGTCAAAAGGAGGTATTGTTTCTGGGGGAGCTAGAGGAGGTCTTAGAATCTACACAAGCTGCAGAATTTCAGCGCTGTATGGTCCCTCTATTTCGGCAGATTGGTCGGTGCCTCAATAGCTCACATTTCCAGGTTGCTGAACGAGCTCTCTTCTTGTGGAACAATGACCATATAGTCAGTTTGATAGCTCAAAAATCGCAGTGTTC

Fln Alignment:

Contig204___ETERHXXXXXXXXXXXXXINGFALPMKEEHKLFLVRALIPLHKPKCVALYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCQKXXXXXXXXXXXXESTQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIVSLIAQ
O04376________________ETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRVLIPLHKPKPIVVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELEEVLEATQPVEFQRCMVPLFQQIGRCLTSSHFQVAERALFLWNNEHIVGLIAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain