SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene193

Length: 529 nt

UniGene Fasta

>biog2_v2.0_unigene193
TGTACTTGATTACGATCATCTTAATCTGGAGATCCCAACTGTCCCCTTACTTGGAAAACTCACCATGACTGGCATACGGGTCTTGATTTACAGTGGAGATCAGGACTCTGTCATACCTTTAACGGGGACACGTACACTGATTAACAATCTGGCTGCAACTCTGAAACTAAATAAAACAGTTCCCTATAGTGTCTGGTTTCAGGGAAAACAGGTGGCGGGATGGGTGCAGGTTTATGGCAATATTTTATCATTCGCAACAGTGAGAGGGGCATCTCATGAAGTGCCATTTTCTCAGCCAGAGAGATCTTTAGTGTTATTCAAGGCATTCCTGCAAGGCCAAACTCCTCCCAGTGTCATGATGTGAATAGATAATGTAAAATACTGATCAGGGGTGAACGACTTGCTGTGTTTAGTGTATTCATACTGTGCCTGTATATTAGATATTCACCAGCTTTGAAGCAAGCAACTTTGTGTCACAGGGTCTGCTTTGTGCTGCTTTCTAAATGGTGTGTGAGGAGTTGGTTAGAAG

Ace file of the UniGene biog2_v2.0_unigene193

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24880	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase-like 45 [Arabidopsis thaliana] ref\|NP_973926.1\| serine carboxypeptidase-like 45 [Arabidopsis thaliana] sp\|Q93Y09.1\|SCP45_ARATH RecName: Full=Serine carboxypeptidase-like 45; Flags: Precursor gb\|AAL24336.1\| serine carboxypeptidase I	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	serine carboxypeptidase-like 45-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX41

Fln msg: your sequence is shorter than subject: 121 - 462

Fln protein: VLDYDHLNLEIPTVPLLGKLTMTGIRVLIYSGDQDSVIPLTGTRTLINNLAATLKLNKTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM*

Protein Length: 122

Fln nts: TGTACTTGATTACGATCATCTTAATCTGGAGATCCCAACTGTCCCCTTACTTGGAAAACTCACCATGACTGGCATACGGGTCTTGATTTACAGTGGAGATCAGGACTCTGTCATACCTTTAACGGGGACACGTACACTGATTAACAATCTGGCTGCAACTCTGAAACTAAATAAAACAGTTCCCTATAGTGTCTGGTTTCAGGGAAAACAGGTGGCGGGATGGGTGCAGGTTTATGGCAATATTTTATCATTCGCAACAGTGAGAGGGGCATCTCATGAAGTGCCATTTTCTCAGCCAGAGAGATCTTTAGTGTTATTCAAGGCATTCCTGCAAGGCCAAACTCCTCCCAGTGTCATGATGTGA___ATAGATAATGTAAAATACTGATCAGGGGTGAACGACTTGCTGTGTTTAGTGTATTCATACTGTGCCTGTATATTAGATATTCACCAGCTTTGAAGCAAGCAACTTTGTGTCACAGGGTCTGCTTTGTGCTGCTTTCTAAATGGTGTGTGAGGAGTTGGTTAGAAG

Fln Alignment:

Contig193___VLDYDHLNLEIPTVPLLGKLTMTGIRVLIYSGDQDSVIPLTGTRTLINNLAATLKLNKTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM
A9NX41________________VLTYDHHNLEIPTVPLLGKLAMTGIRVLIYSGDQDSVIPLTGTRTLVNNLAASLKLNSTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPTVMM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain