SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene185

Length: 403 nt

UniGene Fasta

>biog2_v2.0_unigene185
ATGGGGATCATTACTATTCGCAGGGGAAGGGAAGGGTTTGAGGTGAAGATCAGGCGAGATCATGGCATCGAGGGTGGCATGGCGGGCTTCACGAGCTGCTGCATCTCTTCTCAGGATGAGAAGCACCTGCGTCGATTCTCGGCCGCCTTTCAGATTTCCTTTCTCTTACTCCCGGGGTTTCGCTTCTGTTGTCAAGGACTTGAAATATACTGATTCACATGAGTGGGTCAAAGTTGATGGCCCTCTTGCTGTTATCGGAATAACTGACCATGCTCAGGATCATCTGGGAGATGTTGTGTTTGTTGAACTACCAGATGTTGGAACTACTGTTTCAAAAGGGGGTACTCTTGGTGCTGTAGAAAGTGTGAAAGCAACCAGTGATGTATTCTCGCCAGTTTCTGGG

Ace file of the UniGene biog2_v2.0_unigene185

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27819	1/4
SustainPine v2.0	sp_v2.0_unigene60640	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	glycine decarboxylase complex H-protein [Populus tremuloides]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	glycine decarboxylase complex h-protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Glycine cleavage H-protein	IPR002930	-	-
Sma3	Glycine cleavage H-protein, subgroup	IPR017453	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTH8

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 114 - 171

Fln protein: MASRVAWRASRAAASLLRMRSTCVDSRPPFRFPFSYSRGFASVVKDLKYTDSHEWVKVDGPLAVIGITDHAQDHLGDVVFVELPDVGTTVSKGGTLGAVESVKATSDVFSPVSG

Protein Length: 115

Fln nts: ATGGGGATCATTACTATTCGCAGGGGAAGGGAAGGGTTTGAGGTGAAGATCAGGCGAGATC_-_ATGGCATCGAGGGTGGCATGGCGGGCTTCACGAGCTGCTGCATCTCTTCTCAGGATGAGAAGCACCTGCGTCGATTCTCGGCCGCCTTTCAGATTTCCTTTCTCTTACTCCCGGGGTTTCGCTTCTGTTGTCAAGGACTTGAAATATACTGATTCACATGAGTGGGTCAAAGTTGATGGCCCTCTTGCTGTTATCGGAATAACTGACCATGCTCAGGATCATCTGGGAGATGTTGTGTTTGTTGAACTACCAGATGTTGGAACTACTGTTTCAAAAGGGGGTACTCTTGGTGCTGTAGAAAGTGTGAAAGCAACCAGTGATGTATTCTCGCCAGTTTCTGGG

Fln Alignment:

Contig185___TCVDSRPPFRFPFSYSRGFASVVKDLKYTDSHEWVKVDGPLAVIGITDHAQDHLGDVVFVELPDVGTTVSKGGTLGAVESVKATSDVFSPVSG
A9NTH8________________TCVESRPPFRFPFAYSRGFSSVVKNFKYTDSHEWVKVDGPLAVIGITDHAQEHLGDVVFVELPDVGTTVSKGGTVGVVESVKSTSDVFSPVSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain