SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene81

Length: 1878 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene81

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene433	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	putative salt-inducible protein kinase [Oryza sativa Japonica Group] dbj\|BAD72566.1\| putative salt-inducible protein kinase [Oryza sativa Japonica Group]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U0

Fln msg: your sequence is longer than subject: 256 - 157

Fln protein: MGKPSEQERLRADFWREACMLAQLHHPNVVAFYGIVPDGPGGTLATVTEYMVNGSLKQVLQKKDRYRTFDHRKRLIISMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKVGDLGLSKIKHRTLVSGGVRGTLPWMAPELLNGSSSMVSEKVDVFSFGIVMWELLTGEEPYANMHYGAIIGGIVNNTLRPPIPKGCDPSWRSLMESCWSADPSMRPTFTEITLGLRAMAAMLPPKGQALQAHVQTHLQN*

Protein Length: 257

Fln nts: CAGCTGTAACATCACAACACAATAAGGGTGGATCTGATTCATTCAGTGAATACTTAAAAGACACTTACGTGACAACTGGCAAGGTGTCAGAACTTTCTTCGTGGACAGAATCCCTTGCCACTACCAGTTTGTCACCAACCAACAACAATTCTGTTTCAACTAACCTTCCTGCAATAGGAGAGGGAACCTATCAGGATTTGGACACTACAAAGGATGACCTTAGTGCAGGACTACCTTCAGTAACATCGGTTTTATCAGATCTCAAAGTGGAAGATGAGAGTGTAAAAGGAGAGAGAGAGATCGTTGCTGAGGAAGTCACTGTTGCTTCTCTTGGGCCACCTCTTTGTCCTACTACAACGCTCTCAACGCATGAATGGAACCAGGCTACTGAGGATGGAAAGGTTCAGGGAAACAGTATACCAGAAATACTGCTAAAGGGGACAGAGGAGGAAGCTATTTCTAATATTGATTTGAACTCTGAGGGACCTAATACTGAAGAAGTGGATGATGGTTGGCACACAACAGTTATTAGTGACGATCTTTTAGAGCGGTTGCAGACAATAAAAAATGCTGACCTTGAAGAATTGAGAGAGCTTGGTTCCGGCACCTTTGGGACAGTATATCATGGCAAATGGAGGGGAACAGATGTTGCAATCAAACGGATAAAGAATAGTTGCTTT_-_ATGGGAAAGCCATCTGAGCAAGAACGTTTGAGGGCTGATTTCTGGAGGGAAGCTTGCATGCTTGCACAACTTCATCATCCAAATGTTGTTGCATTCTATGGTATTGTACCAGACGGACCAGGGGGAACCTTGGCAACAGTAACAGAATACATGGTGAATGGCTCACTCAAACAGGTCTTGCAGAAGAAGGATAGATATAGGACATTTGATCATCGGAAGCGTTTGATAATCTCGATGGACGCTGCTTTTGGGATGGAATACTTACATGGCAAGAATATCGTTCACTTTGACTTGAAATGTGAGAATCTATTGGTAAACATGAGAGATCCCCAACGTCCTATATGTAAGGTAGGTGATTTAGGGCTGTCGAAAATTAAACATCGAACATTAGTTTCTGGTGGTGTGCGAGGAACCCTTCCATGGATGGCTCCAGAGCTGTTAAATGGCAGCAGCAGTATGGTTTCTGAAAAGGTTGATGTGTTTTCATTTGGCATTGTAATGTGGGAGCTGCTTACTGGAGAGGAGCCTTATGCCAATATGCATTATGGGGCAATCATTGGTGGCATAGTCAACAATACTTTGCGGCCACCTATCCCTAAGGGGTGTGATCCTTCTTGGAGGTCATTAATGGAGAGTTGTTGGTCAGCAGACCCTTCTATGAGACCCACTTTCACAGAGATCACTCTTGGATTGCGTGCAATGGCAGCAATGCTTCCACCTAAAGGGCAGGCTCTTCAAGCTCACGTTCAAACGCATCTACAGAATTAG___ACTTGCGCAAAATCCCAGTGAATTCGAATCAAGTGTGTTTCTGTTTGGCCAGTTTGCATTTTTTCCAATATTTAGAATATTCATCTCAGCTGCACATTTATGTCCAGTGAGGCTTGAGGGCAGCCTTTTGGAGTTGGTTATCATCCATTCTCCTAATTGAGAGATGTCGGCAATACAATCTGGATTAAATATTTTCCGGGAAATATCTATAATGAAAAGCCCTCCTATTATGGATTAATTTTAGTGTGATTGGAATAATTTGTTATTTTTCTTGGTATGGGAATAAGACGTTGTATAATGCAGATGATTTAATGAATATTTCAGCAATATACCAGTCGTATCCCATATTACCTGTATTCCATTGCTGTTCATCTGAACTCTAAGCATGTGCAAATGTTAAGCCTTTCACGAAGCATGGTTGCTGGGGAAT

Fln Alignment:

Contig81___MEYLHGKNIVHFDLKCENLLVNMRDPQRPICKVGDLGLSKIKHRTLVSGGVRGTLPWMAPELLNGSSSMVSEKVDVFSFGIVMWELLTGEEPYANMHYGAIIGGIVNNTLRPPIPKGCDPSWRSLMESCWSADPSMRPTFTEITLGLRAMAAMLPPK
D5A7U0_______________MEYLHEKGVVHFDLKCENLLVNMRDPHRPVCKIGDMGLSKVKHQTLVSGGVRGTLPWMAPELLSGKSGMVTDKVDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPPVPSWSDPAWKSLMERCWSADPEQRPPFSEISKELRAVAASINVK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
660		75		25	0.996473
665	75		25		0.996473
1444	90		10		0.90298
1454	10	90			0.90298
1455			90	10	0.90298
1456		90	10		0.90298
1457	88		11		0.923564
1458	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
289	300	GA GA GA GA GA GA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain