SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14

Length: 2457 nt

UniGene Fasta

>biog2_v2.0_unigene14
GAGAGCCTTCAGAAGAAGAGAAGGGAGGGTATGCAAGCGCAGCAATTTGCACCCACCGTGCAATCGTCTGCCGTTGAAAAGAAGTTGGAGAGTCTTCCTGCTATGGTTGCAGGAGTATGGTCCGATGAACCAAACCTGCAACTTGAAGCAACAACCCAATTCCGAAAGTTGCTTTCAATTGAGCGTAGTCCTCCTATAGAGGAAGTTATTGATGCAGGTGTTGTTCCTCGCTTTGTTGAATTCCTGACGAGGCATGATTTTCCACAGCTGCAGTTTGAAGCTGCATGGGCTTTGACAAACATAGCTTCAGGAACATCAGAGCATACACGAGTTGTGATTGACCGTGGAGCTGTGCCAATATTTGTACAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTGGCTGGTGACTCGCCTAAATGCAGAGATCTAGTTCTCAGCCATGGTGCCCTGATGCCACTCCTTGCTCAACTGAATGAGCACGCAAAGCTTTCTATGTTGAGAAATGCCACCTGGACCTTGTCTAATTTCTGTCGAGGCAAGCCACAACCTGCATTTGACCAGACAAAGCCAGCTCTACCAGCACTTGAGCGTCTGATTCATTCGAATGATGAAGAAGTCTTAACAGATGCTTGCTGGGCTCTGTCCTATCTGTCTGATGGAACAAATGATAAAATTCAAGCTGTGATCGAGGCTGGTGTCTGTCGAAGATTGGTTGAGCTTCTGCTTCATCCATCTCCATCTGTTCTTATCCCTGCTCTCCGGACTGTTGGCAATATTGTAACTGGAGATGATGTACAGACTCAGTACATTATCAACAATCAGGCACTTCCCTGCCTCTTGGCACTGTTGACCCATAATCATAAGAAAAGTATCAAGAAGGAAGCATGCTGGACGATCTCAAACATAACTGCAGGAAACAAAGATCAAATACAGGCTGTTATCGATGCAAACATCATTCCTCCTCTTGTACAGTTGCTGCAAACTGCTGAGTTTGATATCAAGAAGGAAGCAGCATGGGCTATATCTAATGCTACTTCTGGTGGTACACATGATCAAATCAAATATCTTGTGAATCAAGGATGCATCAAGCCTCTATGTGATCTTCTAGTCTGTCCAGACCCAAGAATTGTAACTGTTTGTCTTGAAGGGCTAGAGAATATTTTGAAAGTTGGGGAAGCAGAGAAGGACCTGGGGAACACTGGAGGAGTAAATCTCTATGCACAGTATATTGACGATGCTGAAGGACTTGAGAAGATTGAGAACCTGCAAAGTCATGACAATAATGAAATTTATGAGAAGGCAGTAAAGATTCTTGAAACTTACTGGCTGGAAGATGATGAAGATGACCAGACGTTACCTGCCACTGGAGATGCTGCACAACCAACGTTCAATTTTGGTGCAAATCAACCAACTGTTCCTTCTGGTGGATTCACCTTTGGTTGAAAAGGAATTTCAGCTATTGCAACCCGGGGGCGATGCTGTGGGTGTTTCAAAGAAAATATTCCAAGGCCTTATTACTACACTGTAGTCAGTCAGTCGTATGCAAGCAAATGCATGGTTTTTGGATGTTACTGGTGGCAGGTTACTTCTGTTGGTATGTCATTATGACAGTACTAACAAAATCGTGCAGATATAAGCTCCTCATTTTGAATGGGTTGGCCTTAATTGGCTTGGTGGTACAGTTTCCATGCTGTACTAGTAAGGTGGTCTTTGTCCATAAGTCATAAAATTGCATAGTTAGATAAATGGACTCTTATCCGATGAGCCTTCTGACCTTTAAAGCTCAATGCTTGAGCCTATTGATATGTTGCCAAGTTGAATGCCAACTTTTGGGTGTTTAGACGAAGCAGTTTGATGGGTCATGAAGGCTCATGGTAATACTAATTGTCTGGTTCTACTTGCATGTGTCCTCCATTTCATCAAAGAGTCTGTCCCATATCGGTCTTGTGGCTAGTAAATGGCCTTACTAACATACTGTTCTGGGATAATCCTGGAACTGTGAGAAGTGCATGTAATCATGTGCTCTCTTCTTCTCCTCTGGCATTTTACCCAGAGTTTGCATTGGATTTTTCACGTTCAAGTGAGTCCTGATCCCTCTCTTCCCTTCTCTTTCTTGTGACAAACTTTGGATGACCCAGAGTTTTGTTCGGATTTCCACTTTCAAGTGAGTCCTATGACCCTTTTTTTCCTCTCTTTCTCGTGCTAACATGTGGACGGGAATAGAGAAAATTCTCTCTTGGAAGTCTGATAGGATTTCCTCCTCATACGGGTACATTCTGTGTCTCAGACCCCTCCTGTTGCCAGTGGTCATTCTATTTTGGTAGTTGAAACTTTTATTAAATCATTTTATGCACTCGCAATATTTGTTCTCCGGACTTGGAGACTGTTTTGTCTATGTAATTTTTTAGTAATTCTATTGTTAATGAA

Ace file of the UniGene biog2_v2.0_unigene14

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27456	95/95

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_77.assembly12x (Fragment) n=3 Tax=core eudicotyledons RepID=D7SY66_VITVI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg:

Fln protein: ESLQKKRREGMQAQQFAPTVQSSAVEKKLESLPAMVAGVWSDEPNLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTRHDFPQLQFEAAWALTNIASGTSEHTRVVIDRGAVPIFVQLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQYIINNQALPCLLALLTHNHKKSIKKEACWTISNITAGNKDQIQAVIDANIIPPLVQLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKDLGNTGGVNLYAQYIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDEDDQTLPATGDAAQPTFNFGANQPTVPSGGFTFG*

Protein Length: 492

Fln nts: GAGAGCCTTCAGAAGAAGAGAAGGGAGGGTATGCAAGCGCAGCAATTTGCACCCACCGTGCAATCGTCTGCCGTTGAAAAGAAGTTGGAGAGTCTTCCTGCTATGGTTGCAGGAGTATGGTCCGATGAACCAAACCTGCAACTTGAAGCAACAACCCAATTCCGAAAGTTGCTTTCAATTGAGCGTAGTCCTCCTATAGAGGAAGTTATTGATGCAGGTGTTGTTCCTCGCTTTGTTGAATTCCTGACGAGGCATGATTTTCCACAGCTGCAGTTTGAAGCTGCATGGGCTTTGACAAACATAGCTTCAGGAACATCAGAGCATACACGAGTTGTGATTGACCGTGGAGCTGTGCCAATATTTGTACAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTGGCTGGTGACTCGCCTAAATGCAGAGATCTAGTTCTCAGCCATGGTGCCCTGATGCCACTCCTTGCTCAACTGAATGAGCACGCAAAGCTTTCTATGTTGAGAAATGCCACCTGGACCTTGTCTAATTTCTGTCGAGGCAAGCCACAACCTGCATTTGACCAGACAAAGCCAGCTCTACCAGCACTTGAGCGTCTGATTCATTCGAATGATGAAGAAGTCTTAACAGATGCTTGCTGGGCTCTGTCCTATCTGTCTGATGGAACAAATGATAAAATTCAAGCTGTGATCGAGGCTGGTGTCTGTCGAAGATTGGTTGAGCTTCTGCTTCATCCATCTCCATCTGTTCTTATCCCTGCTCTCCGGACTGTTGGCAATATTGTAACTGGAGATGATGTACAGACTCAGTACATTATCAACAATCAGGCACTTCCCTGCCTCTTGGCACTGTTGACCCATAATCATAAGAAAAGTATCAAGAAGGAAGCATGCTGGACGATCTCAAACATAACTGCAGGAAACAAAGATCAAATACAGGCTGTTATCGATGCAAACATCATTCCTCCTCTTGTACAGTTGCTGCAAACTGCTGAGTTTGATATCAAGAAGGAAGCAGCATGGGCTATATCTAATGCTACTTCTGGTGGTACACATGATCAAATCAAATATCTTGTGAATCAAGGATGCATCAAGCCTCTATGTGATCTTCTAGTCTGTCCAGACCCAAGAATTGTAACTGTTTGTCTTGAAGGGCTAGAGAATATTTTGAAAGTTGGGGAAGCAGAGAAGGACCTGGGGAACACTGGAGGAGTAAATCTCTATGCACAGTATATTGACGATGCTGAAGGACTTGAGAAGATTGAGAACCTGCAAAGTCATGACAATAATGAAATTTATGAGAAGGCAGTAAAGATTCTTGAAACTTACTGGCTGGAAGATGATGAAGATGACCAGACGTTACCTGCCACTGGAGATGCTGCACAACCAACGTTCAATTTTGGTGCAAATCAACCAACTGTTCCTTCTGGTGGATTCACCTTTGGTTGA___AAAGGAATTTCAGCTATTGCAACCCGGGGGCGATGCTGTGGGTGTTTCAAAGAAAATATTCCAAGGCCTTATTACTACACTGTAGTCAGTCAGTCGTATGCAAGCAAATGCATGGTTTTTGGATGTTACTGGTGGCAGGTTACTTCTGTTGGTATGTCATTATGACAGTACTAACAAAATCGTGCAGATATAAGCTCCTCATTTTGAATGGGTTGGCCTTAATTGGCTTGGTGGTACAGTTTCCATGCTGTACTAGTAAGGTGGTCTTTGTCCATAAGTCATAAAATTGCATAGTTAGATAAATGGACTCTTATCCGATGAGCCTTCTGACCTTTAAAGCTCAATGCTTGAGCCTATTGATATGTTGCCAAGTTGAATGCCAACTTTTGGGTGTTTAGACGAAGCAGTTTGATGGGTCATGAAGGCTCATGGTAATACTAATTGTCTGGTTCTACTTGCATGTGTCCTCCATTTCATCAAAGAGTCTGTCCCATATCGGTCTTGTGGCTAGTAAATGGCCTTACTAACATACTGTTCTGGGATAATCCTGGAACTGTGAGAAGTGCATGTAATCATGTGCTCTCTTCTTCTCCTCTGGCATTTTACCCAGAGTTTGCATTGGATTTTTCACGTTCAAGTGAGTCCTGATCCCTCTCTTCCCTTCTCTTTCTTGTGACAAACTTTGGATGACCCAGAGTTTTGTTCGGATTTCCACTTTCAAGTGAGTCCTATGACCCTTTTTTTCCTCTCTTTCTCGTGCTAACATGTGGACGGGAATAGAGAAAATTCTCTCTTGGAAGTCTGATAGGATTTCCTCCTCATACGGGTACATTCTGTGTCTCAGACCCCTCCTGTTGCCAGTGGTCATTCTATTTTGGTAGTTGAAACTTTTATTAAATCATTTTATGCACTCGCAATATTTGTTCTCCGGACTTGGAGACTGTTTTGTCTATGTAATTTTTTAGTAATTCTATTGTTAATGAA

Fln Alignment:

Contig14___LQFEAAWALTNIASGTSEHTRVVIDRGAVPIFVQLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQYIINNQALPCLLALLTHNHKKSIKKEACWTISNITAGNKDQIQAVIDANIIPPLVQLLQTAEFDIKKEA
C0PSB5_______________VQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSN-KGFIVQAGAINRIIDVL-KHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAV-RAGVVPPLIALLVDQSIGMVDEALAILAILATHQ--EGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1758	81			18	0.999994
1759	81		18		0.999994
1760			18	81	0.999994
1761			18	81	0.999994
1949	89		10		0.999919
2003		8		92	0.999718
2207	8			25	1.0
2240	20	80			0.995493
2241	80	20			0.995493
2265		80	20		0.995493
2307	83		16		0.994512
2340			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain